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Illumina dye sequencing is a technique used to determine the series of base pairs in DNA, also known as DNA sequencing.The reversible terminated chemistry concept was invented by Bruno Canard and Simon Sarfati at the Pasteur Institute in Paris.
Illumina sequencing: it offers a good method for small RNA sequencing and it is the most widely used approach. [7] After the library preparation and amplification steps, the sequencing (based on the use of reversible dye-terminators ) can be performed by using different systems, such as Miseq System, Miseq Series, NextSeq Series and many others ...
In 2012, the standard CAGE protocol was updated by Takahashi et al. [12] to cleave tags with EcoP15I and sequence them on the Illumina-Solexa platform. In 2013, Batut et al. [13] combined CAP trapper, template switching, and 5′-phosphate-dependent exonuclease digestion in RAMPAGE to maximize promoter specificity.
Starting with Illumina 1.3 and before Illumina 1.8, the format encoded a Phred quality score from 0 to 62 using ASCII 64 to 126 (although in raw read data Phred scores from 0 to 40 only are expected). Starting in Illumina 1.5 and before Illumina 1.8, the Phred scores 0 to 2 have a slightly different meaning.
Duplex sequencing tagged adapters can be used in combination with the majority of NGS adapters. In the figures and workflow section of this article, Illumina sequencing adapters are used as an example following the original published protocol.
In 2010 Illumina released the HiSeq 2000 with an output of 200 and then 600G per run which would take 8 days. At its release the HiSeq 2000 provided one of the cheapest sequencing platforms at $0.02 per million bases as costed by the Beijing Genomics Institute. In 2011 Illumina released a benchtop sequencer called the MiSeq.
The Illumina Methylation Assay using the Infinium I platform uses 'BeadChip' technology [clarification needed] to generate a comprehensive genome-wide profiling of human DNA methylation. Similar to bisulfite sequencing and pyrosequencing , this method quantifies methylation levels at various loci within the genome .
The foundation of the method is a novel nucleic acid sequencing library construction method that stably cross-links cDNA amplicons within biological samples. [2] Sequencing data is then generated through an intensive interleaved microscopy and biochemistry protocol and subsequent image processing and bioinformatics.
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