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  2. List of databases for oncogenomic research - Wikipedia

    en.wikipedia.org/wiki/List_of_databases_for_onco...

    Database Institute / Organization Alteration Types Primary Source [t 1] Processed Data [t 2] Organisms Cell lines [t 3] Public Data [t 4] Restricted Data [t 5]; The BioExpress® Oncology Suite from Ocimum Bio Solutions contains gene expression data from primary, metastatic, and benign tumor samples, and normal samples, including matched adjacent controls.

  3. GeneCards - Wikipedia

    en.wikipedia.org/wiki/GeneCards

    It has also improved the speed and sophistication of the search engine, and expanded from a gene-centric dogma to contain gene-set analyses. Version 3 of the database gathers information from more than 90 database resources based on a consolidated gene list. It has also added a suite of GeneCards tools which focus on more specific purposes.

  4. National Center for Biotechnology Information - Wikipedia

    en.wikipedia.org/wiki/National_Center_for...

    NCBI provides the Gene database, Online Mendelian Inheritance in Man, the Molecular Modeling Database (3D protein structures), dbSNP (a database of single-nucleotide polymorphisms), the Reference Sequence Collection, a map of the human genome, and a taxonomy browser, and coordinates with the National Cancer Institute to provide the Cancer ...

  5. dbSNP - Wikipedia

    en.wikipedia.org/wiki/DbSNP

    dbSNP is an online resource implemented to aid biology researchers. Its goal is to act as a single database that contains all identified genetic variation, which can be used to investigate a wide variety of genetically based natural phenomena.

  6. Ensembl genome database project - Wikipedia

    en.wikipedia.org/wiki/Ensembl_genome_database...

    Ensembl makes these data freely accessible to the world research community. All the data and code produced by the Ensembl project is available to download, [7] and there is also a publicly accessible database server allowing remote access. In addition, the Ensembl website provides computer-generated visual displays of much of the data.

  7. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute

  8. ConsensusPathDB - Wikipedia

    en.wikipedia.org/wiki/ConsensusPathDB

    Using the web-interface of the database, one can perform overrepresentation analysis, based on biochemical pathways or on neighbourhood-based entity sets (NESTs) that constitute sub-networks of the overall interaction network containing all physical entities around a central one within a "radius" (number of interactions from the center).

  9. Galaxy (computational biology) - Wikipedia

    en.wikipedia.org/wiki/Galaxy_(computational_biology)

    Galaxy is a scientific workflow system.These systems provide a means to build multi-step computational analyses akin to a recipe. They typically provide a graphical user interface [6] for specifying what data to operate on, what steps to take, and what order to do them in.