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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
RGD (Rat Genome Database): genomic and phenotype data for Rattus norvegicus; Saccharomyces Genome Database: [12] genome of the yeast model organism; SNPedia; SoyBase Database [13] (SoyBase): USDA soybean genetics and genomic database ; UCSC Malaria Genome Browser: genome of malaria causing species (Plasmodium falciparum and others)
Nutritious Rice for the World [2] is a World Community Grid research project in the field of agronomy led by the Samudrala Computational Biology Research Group [1] at the University of Washington. It was launched on May 12, 2008. [3] [4] The objective of this project is to predict the structure of proteins of major strains of rice.
Gramene [17] is an online web database resource for plant comparative genomics and pathway analysis based on Ensembl technology. Plant Genome DataBase Japan [18] (PGDBj) is a website that contains information related to genomes of model and crop plants from databases. It has three main components: ortholog db, DNA marker and linkage map db, and ...
The rice and the wheat genomes, for example, can have 4-6 copies of whole genomes [29] whereas animals typically only have 2 . These duplicated genes may pose a problem for the de novo assembly of sequence fragments, because repeat sequences confuse the computer programs when trying to put the fragments together, and they can be difficult to ...
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The International Rice Genebank holds more than 127,000 accessions of rice and wild relatives and is the biggest collection of rice genetic diversity in the world. [ 25 ] [ 26 ] The International Network for Genetic Evaluation of Rice (INGER) was created by IRRI in 1975 as the International Rice Testing Program IRTP. [ 27 ]
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