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Windows, macOS: GPL: Collaborative project GenoCAD: A computer-assisted design (CAD) tool for synthetic biology, used to design genetic constructs based on grammar rules. Linux, macOS, Windows: Apache License 2.0 GenoCAD Team (Virginia Bioinformatics Institute) Genomespace
free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses.Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]
TRANSFAC: a database about eukaryotic transcription factors, their genomic binding sites and DNA-binding profiles; JASPAR: a database of manually curated, non-redundant transcription factor binding profiles. MetOSite: a database about methionine sulfoxidation sites and its functional roles in proteins [35]
BioNumbers is a free-access database of quantitative data in biology designed to provide the scientific community with access to the large amount of data now generated in the biological literature. The database aims to make quantitative values more easily available, to aid fields such as systems biology .
First GUI based application to support scripting in systems biology modeling. Object Pascal: Yes: 2000 JSim [71] First Java-based systems biology modeling platform: Java: Yes: 2003 MetaMod [72] One of the first PC-based systems biology simulators: BBC Micro: No: 1986 MetaModel [73] Early PC-based systems biology simulator: Turbo Pascal 5.0: No ...
MEGA is in two version. A graphical user interface is available as a native Microsoft Windows program. A command line version, MEGA-Computing Core (MEGA-CC), is available for native cross-platform operation. The method is widely used and cited. With millions of downloads across the releases, MEGA is cited in more than 85,000 papers.
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