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Two examples of frequently used methods that have problems correctly aligning proteins related by circular permutation are dynamic programming and many hidden Markov models. [34] As an alternative to these, a number of algorithms are built on top of non-linear approaches and are able to detect topology -independent similarities, or employ ...
There are a few equivalent ways to state this definition. A cyclic order on X is the same as a permutation that makes all of X into a single cycle, which is a special type of permutation - a circular permutation. Alternatively, a cycle with n elements is also a Z n-torsor: a set with a free transitive action by a finite cyclic group. [1]
1. Carmichael's definition of circular permutation (A permutation such as ... is called a circular permutation or a cyclic permutation. [and later] A circular permutation on two letters, such as (ab), is called a transposition. [and his first theorem is] Any given permutation is a product of circular permutations no two of which have a letter ...
A cyclic permutation consisting of a single 8-cycle. There is not widespread consensus about the precise definition of a cyclic permutation. Some authors define a permutation σ of a set X to be cyclic if "successive application would take each object of the permuted set successively through the positions of all the other objects", [1] or, equivalently, if its representation in cycle notation ...
In combinatorial mathematics and theoretical computer science, a (classical) permutation pattern is a sub-permutation of a longer permutation.Any permutation may be written in one-line notation as a sequence of entries representing the result of applying the permutation to the sequence 123...; for instance the sequence 213 represents the permutation on three elements that swaps elements 1 and 2.
The set X may represent a finite set of beads, and G may be a chosen group of permutations of the beads. For example, if X is a necklace of n beads in a circle, then rotational symmetry is relevant so G is the cyclic group C n, while if X is a bracelet of n beads in a circle, rotations and reflections are relevant so G is the dihedral group D n ...
The ! permutations of the numbers from 1 to may be placed in one-to-one correspondence with the ! numbers from 0 to ! by pairing each permutation with the sequence of numbers that count the number of positions in the permutation that are to the right of value and that contain a value less than (that is, the number of inversions for which is the ...