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This propensity for DNA within the nucleosome to "breathe" has important functional consequences for all DNA-binding proteins that operate in a chromatin environment. [40] In particular, the dynamic breathing of nucleosomes plays an important role in restricting the advancement of RNA polymerase II during transcription elongation.
The major structures in DNA compaction: DNA, the nucleosome, the 11 nm beads on a string chromatin fibre and the metaphase chromosome. Chromatin is a complex of DNA and protein found in eukaryotic cells. [1] The primary function is to package long DNA molecules into more compact, denser structures.
In eukaryotic cells, DNA is associated with about an equal mass of histone proteins in a highly condensed nucleoprotein complex called chromatin. [14] Deoxyribonucleoproteins in this kind of complex interact to generate a multiprotein regulatory complex in which the intervening DNA is looped or wound.
Histones: DNA is wrapped around histones to form nucleosomes, which are basic units of chromatin structure. Each nucleosome consists of 8 histone protein subunits, around which roughly 147 DNA base pairs are wrapped in 1.67 left-handed turns. Nucleosomes provide about 7-fold initial linear compaction of DNA. [15]
DNA quaternary structure is used to refer to the binding of DNA to histones to form nucleosomes, and then their organisation into higher-order chromatin fibres. [2] The quaternary structure of DNA strongly affects how accessible the DNA sequence is to the transcription machinery for expression of genes. DNA quaternary structure varies over time ...
Chromatin organization: The basic unit of chromatin organization is the nucleosome, which comprises 147 bp of DNA wrapped around a core of histone proteins. The level of nucleosomal packaging can have profound consequences on all DNA-mediated processes including gene regulation.
Nucleic acids consist of a chain of linked units called nucleotides. Each nucleotide consists of three subunits: a phosphate group and a sugar (ribose in the case of RNA, deoxyribose in DNA) make up the backbone of the nucleic acid strand, and attached to the sugar is one of a set of nucleobases.
The packaging of DNA into nucleosomes causes a 10 nanometer fibre which may further condense up to 30 nm fibres [33] Most of the euchromatin in interphase nuclei appears to be in the form of 30-nm fibers. [33] Chromatin structure is the more decondensed state, i.e. the 10-nm conformation allows transcription. [33] Heterochromatin vs. euchromatin