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Input is usually a sam or bam file specified as an argument, but could be sam or bam data piped from any other command. Possible uses include extracting a subset of data into a new file, converting between BAM and SAM formats, and just looking at the raw file contents. The order of extracted reads is preserved. sort
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]
The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...
Merge PDF files selecting entire documents or subsections of them. It provides a number of settings to let the user decide what to do in case the original PDF files contain Acro Forms (Acrobat forms) or an outline and it can generate a table of contents, normalize pages size and page margins and add blank pages.
The Windows Package Manager (also known as winget) is a free and open-source package manager designed by Microsoft for Windows 10 and Windows 11. It consists of a command-line utility and a set of services for installing applications. [5] [6] Independent software vendors can use it as a distribution channel for their software packages.
"Free and open-source software" (FOSS) is an umbrella term for software that is considered free software and/or open-source software. [1] The precise definition of the terms "free software" and "open-source software" applies them to any software distributed under terms that allow users to use, modify, and redistribute said software in any manner they see fit, without requiring that they pay ...
Sam is a multi-file text editor based on structural regular expressions. It was originally designed in the early 1980s at Bell Labs by Rob Pike with the help of Ken Thompson and other Unix developers for the Blit windowing terminal running on v9 Unix ; [ 1 ] it was later ported to other systems.
Free software, libre software, libreware [1] [2] sometimes known as freedom-respecting software is computer software distributed under terms that allow users to run the software for any purpose as well as to study, change, and distribute it and any adapted versions.