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Input is usually a sam or bam file specified as an argument, but could be sam or bam data piped from any other command. Possible uses include extracting a subset of data into a new file, converting between BAM and SAM formats, and just looking at the raw file contents. The order of extracted reads is preserved. sort
The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...
This is a list of free and open-source software (FOSS) packages, computer software licensed under free software licenses and open-source licenses. Software that fits the Free Software Definition may be more appropriately called free software ; the GNU project in particular objects to their works being referred to as open-source . [ 1 ]
PDFsam Basic or PDF Split and Merge is a free and open-source cross-platform desktop application to split, merge, extract pages, rotate and mix PDF documents. PDFsam uses a freemium model and encourages buying the full version with popups.
Category for free and open-source software that runs exclusively on the Microsoft Windows family of operating systems. Free and open-source software portal See also: Category:macOS-only free software and Category:Linux-only free software
This is a list of software that provides an alternative graphical user interface for Microsoft Windows operating systems. The technical term for this interface is a shell. Windows' standard user interface is the Windows shell; Windows 3.0 and Windows 3.1x have a different shell, called Program Manager. The programs in this list do not restyle ...
"Free and open-source software" (FOSS) is an umbrella term for software that is considered free software and/or open-source software. [1] The precise definition of the terms "free software" and "open-source software" applies them to any software distributed under terms that allow users to use, modify, and redistribute said software in any manner they see fit, without requiring that they pay ...
Some free software advocates use the terms "Free and Open-Source Software" (FOSS) or "Free/Libre and Open-Source Software" (FLOSS) as a form of inclusive compromise, which brings free and open-source software advocates together to work on projects cohesively. Some users believe this is an ideal solution in order to promote both the user's ...