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In E. coli, DNA topoisomerase IV plays the major role in the separation of the catenated chromosomes, transiently breaking both DNA strands of one chromosome and allowing the other chromosome to pass through the break. There has been some confusion about the role DNA gyrase plays in decatenation. To define the nomenclature, there are two types ...
E. coli colonies containing the fluorescent pGLO plasmid. Escherichia coli (/ ˌ ɛ ʃ ɪ ˈ r ɪ k i ə ˈ k oʊ l aɪ /; commonly abbreviated E. coli) is a Gram-negative gammaproteobacterium commonly found in the lower intestine of warm-blooded organisms (endotherms). The descendants of two isolates, K-12 and B strain, are used routinely in ...
E. coli is a chemoheterotroph whose chemically defined medium must include a source of carbon and energy. [16] E. coli is the most widely studied prokaryotic model organism, and an important species in the fields of biotechnology and microbiology, where it has served as the host organism for the majority of work with recombinant DNA. Under ...
The haploid circular chromosome in E. coli consists of ~ 4.6 x 10 6 bp. If DNA is relaxed in the B form, it would have a circumference of ~1.5 millimeters (0.332 nm x 4.6 x 10 6). However, a large DNA molecule such as the E. coli chromosomal DNA does not remain a straight rigid molecule in a suspension. [5]
The oriC site in E. coli has three A T rich 13 base pair regions followed by four 9 bp regions with the sequence TTAT(C or A)CA(C or A)A. [5] DnaA molecules bind to the 9 bp regions, which wrap around the proteins causing the DNA at the AT-rich region to unwind. [6]
More than five decades ago, Jacob, Brenner, and Cuzin proposed the replicon hypothesis to explain the regulation of chromosomal DNA synthesis in E. coli. [18] The model postulates that a diffusible, trans-acting factor, a so-called initiator, interacts with a cis-acting DNA element, the replicator, to promote replication onset at a nearby origin.
Analysis of over 2000 Escherichia coli genomes reveals an E. coli core genome of about 3100 gene families and a total of about 89,000 different gene families. [5] Genome sequences show that parasitic bacteria have 500–1200 genes, free-living bacteria have 1500–7500 genes, and archaea have 1500–2700 genes. [6]
In E. coli chromosomes, the origin and terminus of replication divide the genome into oppositely replicated halves called replichores. Replichore 1, which is replicated clockwise, has the presented strand of E. coli as its leading strand; in replichore 2 the complementary strand is the leading one.