Search results
Results from the WOW.Com Content Network
In a discrete water molecule, there are two hydrogen atoms and one oxygen atom. The simplest case is a pair of water molecules with one hydrogen bond between them, which is called the water dimer and is often used as a model system. When more molecules are present, as is the case with liquid water, more bonds are possible because the oxygen of ...
The α-helix can be described as a 3.6 13 helix, since the i + 4 spacing adds three more atoms to the H-bonded loop compared to the tighter 3 10 helix, and on average, 3.6 amino acids are involved in one ring of α-helix. The subscripts refer to the number of atoms (including the hydrogen) in the closed loop formed by the hydrogen bond. [12]
Peptide bond formation via dehydration reaction. When two amino acids form a dipeptide through a peptide bond, [1] it is a type of condensation reaction. [2] In this kind of condensation, two amino acids approach each other, with the non-side chain (C1) carboxylic acid moiety of one coming near the non-side chain (N2) amino moiety of the other.
Dimers of carboxylic acids are often found in the vapour phase. Anhydrous carboxylic acids form dimers by hydrogen bonding of the acidic hydrogen and the carbonyl oxygen. For example, acetic acid forms a dimer in the gas phase, where the monomer units are held together by hydrogen bonds. [3] Many OH-containing molecules form dimers, e.g. the ...
In other words, if water was formed from two identical O-H bonds and two identical sp 3 lone pairs on the oxygen atom as predicted by valence bond theory, then its photoelectron spectrum (PES) would have two (degenerate) peaks and energy, one for the two O-H bonds and the other for the two sp 3 lone pairs.
Hydrogen bonds contribute to the stability of ion pairs with e.g. protonated ammonium ions, and with anions is formed by deprotonation as in the case of carboxylate, phosphate etc; then the association constants depend on the pH. Entropic driving forces for ion pairing (in absence of significant H-bonding contributions) are also found in ...
By convention, a chain under 30 amino acids is often identified as a peptide, rather than a protein. [1] To be able to perform their biological function, proteins fold into one or more specific spatial conformations driven by a number of non-covalent interactions, such as hydrogen bonding, ionic interactions, Van der Waals forces, and ...
The water molecule is amphoteric in aqueous solution. It can either gain a proton to form a hydronium ion H 3 O +, or else lose a proton to form a hydroxide ion OH −. [5] Another possibility is the molecular autoionization reaction between two water molecules, in which one water molecule acts as an acid and another as a base.