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  2. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    With BAR 3.0 and a sequence you can annotate when possible: function (Gene Ontology), structure (Protein Data Bank), protein domains (Pfam). Also if your sequence falls into a cluster with a structural/some structural template/s we provide an alignment towards the template/templates based on the Cluster-HMM (HMM profile) that allows you to ...

  3. Predictprotein - Wikipedia

    en.wikipedia.org/wiki/Predictprotein

    PredictProtein (PP) is an automatic service that searches up-to-date public sequence databases, creates alignments, and predicts aspects of protein structure and function. Users send a protein sequence and receive a single file with results from database comparisons and prediction methods.

  4. Proteome Analyst - Wikipedia

    en.wikipedia.org/wiki/Proteome_Analyst

    Proteome Analyst (PA) is a freely available web server and online toolkit for predicting protein subcellular localization, or where a protein resides in a cell. [1] [2] In the field of proteomics, accurately predicting a protein's subcellular localization, or where a specific protein is located inside a cell, is an important step in the large scale study of proteins.

  5. HMMER - Wikipedia

    en.wikipedia.org/wiki/HMMER

    The four search types phmmer, hmmsearch, hmmscan and jackhmmer are supported (see Programs). The search function accepts single sequences as well as sequence alignments or profile HMMs. [10] The search results are accompanied by a report on the taxonomic breakdown, and the domain organisation of the hits. Search results can then be filtered ...

  6. Protein subcellular localization prediction - Wikipedia

    en.wikipedia.org/wiki/Protein_subcellular...

    Similarly, Light-Attention uses machine learning methods to predict ten different common subcellular locations. [ 12 ] The first model to generalize protein subcellular localization to all cell line does so by leveraging images of subcellular landmark stains (i.e., nuclear, plasma membrane, and endoplasmic reticulum markers) across multiple ...

  7. Protein aggregation predictors - Wikipedia

    en.wikipedia.org/wiki/Protein_aggregation_predictors

    sequence - Overall generic and amyloidogenic regions based on the consensus PASTA 2.0 [30] 2014 Web Server - PASTA 2.0: Secondary structure-related. Predicts the most aggregation-prone portions and the corresponding β-strand inter-molecular pairing for multiple input sequences. sequence top pairings and energies, mutations and protein-protein

  8. Generate:Biomedicines - Wikipedia

    en.wikipedia.org/wiki/Generate:Biomedicines

    At that time, Generate announced its focus on using machine learning algorithms and big data to design biological compounds targeting multiple diseases, including SARS-CoV-2, the virus causing COVID-19. Its computational platform integrated vast datasets of protein structures and genetic sequences to develop governing rules for designing new ...

  9. Protein function prediction - Wikipedia

    en.wikipedia.org/wiki/Protein_function_prediction

    The development of protein domain databases such as Pfam (Protein Families Database) [10] allow us to find known domains within a query sequence, providing evidence for likely functions. The dcGO website [ 11 ] contains annotations to both the individual domains and supra-domains (i.e., combinations of two or more successive domains), thus via ...