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Biological databases are stores of biological information. [1] The journal Nucleic Acids Research regularly publishes special issues on biological databases and has a list of such databases. The 2018 issue has a list of about 180 such databases and updates to previously described databases. [2] Omics Discovery Index can be used to browse and search
Examples of biological pathways in Reactome include signal transduction, innate and acquired immune function, transcriptional regulation, programmed cell death and classical intermediary metabolism. The pathways represented in Reactome are species-specific, with each pathway step supported by literature citations that contain an experimental ...
Indian Citation Index (ICI) is a home grown abstracts and citation database, with multidisciplinary objective knowledge contents from about 1000 top Indian scholarly journals. It provides powerful search engine to fulfill search and evaluation purposes for researchers, policy makers, decision makers etc. Subscription ICI [78] IARP ...
Such a pathway can trigger the assembly of new molecules, such as a fat or protein. Pathways can also turn genes on and off, or spur a cell to move. [1] Some of the most common biological pathways are involved in metabolism, the regulation of gene expression and the transmission of signals. Pathways play a key role in advanced studies of genomics.
WikiPathways is originally built using MediaWiki software, [4] a custom graphical pathway editing tool (PathVisio [5]) and integrated BridgeDb [6] databases covering major gene, protein, and metabolite systems. WikiPathways was founded in 2008 by Thomas Kelder, Alex Pico, Martijn Van Iersel, Kristina Hanspers, Bruce Conklin and Chris Evelo.
The database can also dynamically generate interaction networks to visualize the results of database searches. Pathways and dynamically generated networks are displayed in GIF and SVG images and can be downloaded as XML (including the standard pathway interchange format, BioPAX). The entire database is also available for download.
Citation Hunt: A tool for browsing snippets of Wikipedia articles that lack citations. Citer: Converts a URL, DOI, ISBN, PMID, PMCID, OCLC, or Google Books URL into a citation and shortened footnote. It also can generate citations for certain major news websites (e.g., The New York Times) and the Wayback Machine.
curated resource of human signal transduction pathways MEGA: free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]
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