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2. List of biological databases - Wikipedia

   en.wikipedia.org/wiki/List_of_biological_databases

   Biological databases are stores of biological information. [1] The journal Nucleic Acids Research regularly publishes special issues on biological databases and has a list of such databases. The 2018 issue has a list of about 180 such databases and updates to previously described databases. [2] Omics Discovery Index can be used to browse and search

3. WikiPathways - Wikipedia

   en.wikipedia.org/wiki/WikiPathways

   WikiPathways is originally built using MediaWiki software, [4] a custom graphical pathway editing tool (PathVisio [5]) and integrated BridgeDb [6] databases covering major gene, protein, and metabolite systems. WikiPathways was founded in 2008 by Thomas Kelder, Alex Pico, Martijn Van Iersel, Kristina Hanspers, Bruce Conklin and Chris Evelo.

4. Reactome - Wikipedia

   en.wikipedia.org/wiki/Reactome

   Examples of biological pathways in Reactome include signal transduction, innate and acquired immune function, transcriptional regulation, programmed cell death and classical intermediary metabolism. The pathways represented in Reactome are species-specific, with each pathway step supported by literature citations that contain an experimental ...

5. List of academic databases and search engines - Wikipedia

   en.wikipedia.org/wiki/List_of_academic_databases...

   Indian Citation Index (ICI) is a home grown abstracts and citation database, with multidisciplinary objective knowledge contents from about 1000 top Indian scholarly journals. It provides powerful search engine to fulfill search and evaluation purposes for researchers, policy makers, decision makers etc. Subscription ICI [78] IARP ...

6. Biological pathway - Wikipedia

   en.wikipedia.org/wiki/Biological_pathway

   Such a pathway can trigger the assembly of new molecules, such as a fat or protein. Pathways can also turn genes on and off, or spur a cell to move. [1] Some of the most common biological pathways are involved in metabolism, the regulation of gene expression and the transmission of signals. Pathways play a key role in advanced studies of genomics.

7. KEGG - Wikipedia

   en.wikipedia.org/wiki/KEGG

   KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.

8. List of systems biology visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_systems_biology...

   curated resource of human signal transduction pathways MEGA: free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]

9. Pathway analysis - Wikipedia

   en.wikipedia.org/wiki/Pathway_analysis

   Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...