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The course languages are English and German. openHPI offers around six to ten courses per year. All courses follow the same educational format: The subject domain is split into two to six weekly units. Each week, video lectures, reading materials and quizzes are presented in a learning sequence.
BioJava is an open-source software project dedicated to provide Java tools to process biological data. [1] [2] [3] BioJava is a set of library functions written in the programming language Java for manipulating sequences, protein structures, file parsers, Common Object Request Broker Architecture (CORBA) interoperability, Distributed Annotation System (DAS), access to AceDB, dynamic ...
Suite of tools for assembly, alignment, and analysis of short read next generation sequencing data Unix/Linux, macOS: GPL: BGI: Staden Package: Sequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin. Written in C, C++, Fortran and Tcl. Linux, macOS, Windows: BSD: Wellcome Trust Sanger Institute, Medical Research Council
wapRNA This is a free web-based application for the processing of high-throughput RNA-Seq data (wapRNA) from next generation sequencing (NGS) platforms, such as Genome Analyzer of Illumina Inc. (Solexa) and SOLiD of Applied Biosystems (SOLiD). wapRNA provides an integrated tool for RNA sequence, refers to the use of High-throughput sequencing ...
Template talk:Java; Java (programming language) Java annotation; Java API for XML Processing; Java class loader; Java collections framework; Java Modeling Language; Java Pathfinder; Java remote method invocation; Java syntax; Jakarta Transactions; Java version history; Template:Java/doc; JavaBeans; JavaFX; JFace; JGroups; Joins (concurrency ...
An open reading frame (ORF) is a reading frame that has the potential to be transcribed into RNA and translated into protein. It requires a continuous sequence of DNA which may include a start codon, through a subsequent region which has a length that is a multiple of 3 nucleotides, to a stop codon in the same reading frame.
The ORF Finder (Open Reading Frame Finder) [16] is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes.
To overcome these issues, dynamic sequencing programs that are efficient, highly cost effective and able to resolve errors and repeats were developed. Velvet algorithms was designed for this and are able to perform short read de novo sequencing alignment in relatively short computational time and with lower memory usage compared to other ...