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Xylene cyanol can be used as an electrophoretic color marker, or tracking dye, to monitor the process of agarose gel electrophoresis and polyacrylamide gel electrophoresis. Bromophenol blue and orange G can also be used for this purpose. Once mixed with the sample, the concentration of xylene cyanol is typically about 0.005% to 0.03%.
Xylene is used in the laboratory to make baths with dry ice to cool reaction vessels, [17] and as a solvent to remove synthetic immersion oil from the microscope objective in light microscopy. [18] In histology, xylene is the most widely used clearing agent. [19] Xylene is used to remove paraffin from dried microscope slides prior to staining.
Xylene and bromophenol blue are the most commonly used dyes. [ citation needed ] Generally speaking, Orange G migrates faster than bromophenol blue, which migrates faster than xylene cyanol, but the apparent "sizes" of these dyes (compared to DNA molecules) varies with the concentration of agarose and the buffer system used.
Xylene is often used in paints, glues, pesticides and cleaning agents. Xylene also is used in the plastics, chemical and synthetic fiber industries. As a vapor, xylene is heavier than air, so it ...
Since DNA is not visible in natural light, the progress of the electrophoresis is monitored using colored dyes. Xylene cyanol (light blue color) comigrates large DNA fragments, while Bromophenol blue (dark blue) comigrates with the smaller fragments. Less commonly used dyes include Cresol Red and Orange G which migrate ahead of bromophenol blue.
It might seem like a simple question. But the science behind a blue sky isn't that easy. For starters, it involves something called the Rayleigh effect, or Rayleigh scattering. But that same ...
Xylene cyanol and Bromophenol blue are common dyes found in loading buffers; they run about the same speed as DNA fragments that are 5000 bp and 300 bp in length respectively, but the precise position varies with percentage of the gel.
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