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  2. Junctional diversity - Wikipedia

    en.wikipedia.org/wiki/Junctional_diversity

    Generation of junctional diversity starts as the proteins, recombination activating gene-1 and -2 (RAG1 and RAG2), along with DNA repair proteins, such as Artemis, [2] are responsible for single-stranded cleavage of the hairpin loops and addition of a series of palindromic, 'P' nucleotides.

  3. V (D)J recombination - Wikipedia

    en.wikipedia.org/wiki/V(D)J_recombination

    DNA-PK forms a complex that leads to its autophosphorylation, resulting in activation of Artemis. The coding end hairpins are opened by the activity of Artemis. [17] If they are opened at the center, a blunt DNA end will result; however in many cases, the opening is "off-center" and results in extra bases remaining on one strand (an overhang).

  4. Molecular models of DNA - Wikipedia

    en.wikipedia.org/wiki/Molecular_models_of_DNA

    Here, individual DNA tiles (model at left) self-assemble into a highly ordered DNA 2D-nanogrid (AFM image at right). There are various uses of DNA molecular modeling in Genomics and Biotechnology research applications, from DNA repair to PCR and DNA nanostructures. Two-dimensional DNA junction arrays have been visualized by Atomic force microscopy.

  5. File:Boxplot vs PDF.svg - Wikipedia

    en.wikipedia.org/wiki/File:Boxplot_vs_PDF.svg

    You are free: to share – to copy, distribute and transmit the work; to remix – to adapt the work; Under the following conditions: attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made.

  6. Microhomology-mediated end joining - Wikipedia

    en.wikipedia.org/wiki/Microhomology-mediated_end...

    Microhomology-mediated end joining (MMEJ), also known as alternative nonhomologous end-joining (Alt-NHEJ) is one of the pathways for repairing double-strand breaks in DNA. As reviewed by McVey and Lee, [1] the foremost distinguishing property of MMEJ is the use of microhomologous sequences during the alignment of broken ends before joining, thereby resulting in deletions flanking the original ...

  7. LexA repressor - Wikipedia

    en.wikipedia.org/wiki/Lexa_repressor

    The dimerization domain binds to other LexA polypeptides to form dumbbell shaped dimers. The DNA-binding domain is a variant form of the helix-turn-helix DNA binding motif, [4] and is usually located at the N-terminus of the protein. [1] This domain is bound to an SOS box upstream of SOS response genes until DNA damage stimulates ...

  8. High-mobility group - Wikipedia

    en.wikipedia.org/wiki/High-mobility_group

    A member of the HMG family of proteins, HMGB1, has also been shown to have an extracellular activity as a chemokine, attracting neutrophils and mononuclear inflammatory cells to the infected liver. [3] The high-mobility group protein such as HMO1 [4] alters DNA architecture by binding, bending and

  9. CUT&RUN sequencing - Wikipedia

    en.wikipedia.org/wiki/CUT&RUN_sequencing

    CUT&RUN sequencing, also known as cleavage under targets and release using nuclease, is a method used to analyze protein interactions with DNA.CUT&RUN sequencing combines antibody-targeted controlled cleavage by micrococcal nuclease with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins.