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Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the evolutionary history of life. Two segments of DNA can have shared ancestry because of three phenomena: either a speciation event (orthologs), or a duplication event (paralogs), or else a horizontal (or lateral) gene ...
Secondary homology is implied by parsimony analysis, where a character state that arises only once on a tree is taken to be homologous. [20] [21] As implied in this definition, many cladists consider secondary homology to be synonymous with synapomorphy, a shared derived character or trait state that distinguishes a clade from other organisms.
Sequence comparison is considered a measure robust enough to correct erroneous assumptions in the phylogenetic tree in instances where other evidence is scarce. For example, neutral human DNA sequences are approximately 1.2% divergent (based on substitutions) from those of their nearest genetic relative, the chimpanzee , 1.6% from gorillas ...
Homology is the term used to characterize the similarity of features that can be parsimoniously explained by common ancestry. Homoplasy is the term used to describe a feature that has been gained or lost independently in separate lineages over the course of evolution.
In the genomic branch of bioinformatics, homology is used to predict the function of a gene: if the sequence of gene A, whose function is known, is homologous to the sequence of gene B, whose function is unknown, one could infer that B may share A's function. In structural bioinformatics, homology is used to determine which parts of a protein ...
A protein superfamily is the largest grouping of proteins for which common ancestry can be inferred (see homology).Usually this common ancestry is inferred from structural alignment [1] and mechanistic similarity, even if no sequence similarity is evident. [2]
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Homology (biology), any characteristic of biological organisms that is derived from a common ancestor Sequence homology , biological homology between DNA, RNA, or protein sequences Homologous chromosomes , chromosomes in a biological cell that pair up (synapse) during meiosis