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  2. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    Free open source: Orac download page: NAMD + VMD: Yes Yes Yes Yes No Yes I Yes Yes Fast, parallel MD, CUDA Proprietary, free academic use, source code Beckman Institute: NWChem: No No Yes Yes No No Yes No No High-performance computational chemistry software, includes quantum mechanics, molecular dynamics and combined QM-MM methods

  3. Computational chemistry - Wikipedia

    en.wikipedia.org/wiki/Computational_chemistry

    Quantum computational chemistry addresses these challenges using quantum computing methods, such as qubitization and quantum phase estimation, which are believed to offer scalable solutions. [75] Qubitization involves adapting the Hamiltonian operator for more efficient processing on quantum computers, enhancing the simulation's efficiency.

  4. Computational Resource for Drug Discovery - Wikipedia

    en.wikipedia.org/wiki/Computational_Resource_for...

    Computational Resources for Drug Discovery (CRDD) is an important module of the in silico module of Open Source for Drug Discovery (OSDD). [1] The CRDD web portal provides computer resources related to drug discovery , predicting inhibitors, and predicting the ADME-Tox properties of molecules on a single platform.

  5. List of quantum chemistry and solid-state physics software

    en.wikipedia.org/wiki/List_of_quantum_chemistry...

    Quantum chemistry computer programs are used in computational chemistry to implement the methods of quantum chemistry. Most include the Hartree–Fock (HF) and some post-Hartree–Fock methods. They may also include density functional theory (DFT), molecular mechanics or semi-empirical quantum chemistry methods .

  6. Drug discovery - Wikipedia

    en.wikipedia.org/wiki/Drug_discovery

    Another method for drug discovery is de novo drug design, in which a prediction is made of the sorts of chemicals that might (e.g.) fit into an active site of the target enzyme. For example, virtual screening and computer-aided drug design are often used to identify new chemical moieties that may interact with a target protein.

  7. Quantum computational chemistry - Wikipedia

    en.wikipedia.org/wiki/Quantum_computational...

    Quantum computational chemistry is an emerging field that exploits quantum computing to simulate chemical systems. Despite quantum mechanics' foundational role in understanding chemical behaviors, traditional computational approaches face significant challenges, largely due to the complexity and computational intensity of quantum mechanical equations.

  8. Free-energy perturbation - Wikipedia

    en.wikipedia.org/wiki/Free-energy_perturbation

    An alternative to free-energy perturbation for computing potentials of mean force in chemical space is thermodynamic integration. Another alternative, which is probably more efficient, is the Bennett acceptance ratio method. Adaptations to FEP exist which attempt to apportion free-energy changes to subsections of the chemical structure. [5]

  9. Quantum computing - Wikipedia

    en.wikipedia.org/wiki/Quantum_computing

    Neuromorphic quantum computing (abbreviated as ‘n.quantum computing’) is an unconventional computing type of computing that uses neuromorphic computing to perform quantum operations. It was suggested that quantum algorithms, which are algorithms that run on a realistic model of quantum computation, can be computed equally efficiently with ...