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  2. Chemical formula - Wikipedia

    en.wikipedia.org/wiki/Chemical_formula

    The Hill system (or Hill notation) is a system of writing empirical chemical formulae, molecular chemical formulae and components of a condensed formula such that the number of carbon atoms in a molecule is indicated first, the number of hydrogen atoms next, and then the number of all other chemical elements subsequently, in alphabetical order ...

  3. Wikipedia:Molecular structure diagram - Wikipedia

    en.wikipedia.org/wiki/Wikipedia:Molecular...

    One can subdivide chemical compounds into two main groups: molecules, which includes most organic, polyatomic gases, and organometallic compounds, and nonmolecular species, which includes most purely inorganic compounds. The structures of many reagents are often misunderstood because simplified formulas are presented in reaction schemes whereas ...

  4. Simplified Molecular Input Line Entry System - Wikipedia

    en.wikipedia.org/wiki/Simplified_Molecular_Input...

    The Simplified Molecular Input Line Entry System (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.

  5. Skeletal formula - Wikipedia

    en.wikipedia.org/wiki/Skeletal_formula

    The skeletal formula of the antidepressant drug escitalopram, featuring skeletal representations of heteroatoms, a triple bond, phenyl groups and stereochemistry. The skeletal formula, line-angle formula, bond-line formula or shorthand formula of an organic compound is a type of molecular structural formula that serves as a shorthand representation of a molecule's bonding and some details of ...

  6. Hierarchical editing language for macromolecules - Wikipedia

    en.wikipedia.org/wiki/Hierarchical_Editing...

    The hierarchical editing language for macromolecules (HELM) is a method of describing complex biological molecules. It is a notation that is machine readable to render the composition and structure of peptides, proteins, oligonucleotides, and related small molecule linkers. [1]

  7. SMILES arbitrary target specification - Wikipedia

    en.wikipedia.org/wiki/Smiles_arbitrary_target...

    The Leatherface program [11] is a general purpose molecule editor which allows automated modification of a number of substructural features of molecules in databases, including protonation state, hydrogen count, formal charge, isotopic weight and bond order. The molecular editing rules used by Leatherface are defined in SMARTS.

  8. Wiswesser line notation - Wikipedia

    en.wikipedia.org/wiki/Wiswesser_Line_Notation

    It was also the tool used to develop the CAOCI (Commercially Available Organic Chemical Intermediates) database, the datafile from which Accelrys' (successor to MDL) ACD file was developed. WLN is still being extensively used by BARK Information Services. Descriptions of how to encode molecules as WLN have been published in several books. [6 ...

  9. Cucurbituril - Wikipedia

    en.wikipedia.org/wiki/Cucurbituril

    Computer models of CB[5], CB[6], and CB[7]. Top row is the view into the cavity and the bottom is the side view. In host–guest chemistry, cucurbiturils are macrocyclic molecules made of glycoluril (=C 4 H 2 N 4 O 2 =) monomers linked by methylene bridges (−CH 2 −).