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  2. Graph canonization - Wikipedia

    en.wikipedia.org/wiki/Graph_canonization

    A canonical form is a labeled graph Canon(G) that is isomorphic to G, such that every graph that is isomorphic to G has the same canonical form as G. Thus, from a solution to the graph canonization problem, one could also solve the problem of graph isomorphism : to test whether two graphs G and H are isomorphic, compute their canonical forms ...

  3. Canonical form - Wikipedia

    en.wikipedia.org/wiki/Canonical_form

    A canonical form is a labeled graph Canon(G) that is isomorphic to G, such that every graph that is isomorphic to G has the same canonical form as G. Thus, from a solution to the graph canonization problem, one could also solve the problem of graph isomorphism : to test whether two graphs G and H are isomorphic, compute their canonical forms ...

  4. Weisfeiler Leman graph isomorphism test - Wikipedia

    en.wikipedia.org/wiki/Weisfeiler_Leman_graph...

    The original formulation is based on graph canonization, a normal form for graphs, while there is also a combinatorial interpretation in the spirit of color refinement and a connection to logic. There are several versions of the test (e.g. k-WL and k-FWL) referred to in the literature by various names, which easily leads to confusion.

  5. Glossary of graph theory - Wikipedia

    en.wikipedia.org/wiki/Glossary_of_graph_theory

    Canonical forms may also be called canonical invariants or complete invariants, and are sometimes defined only for the graphs within a particular family of graphs. Graph canonization is the process of computing a canonical form. card A graph formed from a given graph by deleting one vertex, especially in the context of the reconstruction ...

  6. Simplified Molecular Input Line Entry System - Wikipedia

    en.wikipedia.org/wiki/Simplified_Molecular_Input...

    The Simplified Molecular Input Line Entry System (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.

  7. Biological network - Wikipedia

    en.wikipedia.org/wiki/Biological_network

    In biology, pairwise interactions have historically been the focus of intense study. With the recent advances in network science , it has become possible to scale up pairwise interactions to include individuals of many species involved in many sets of interactions to understand the structure and function of larger ecological networks . [ 29 ]

  8. Topological data analysis - Wikipedia

    en.wikipedia.org/wiki/Topological_data_analysis

    Persistent homology is visualized through a barcode or persistence diagram. The barcode has its root in abstract mathematics. Namely, the category of finite filtered complexes over a field is semi-simple. Any filtered complex is isomorphic to its canonical form, a direct sum of one- and two-dimensional simple filtered complexes.

  9. Systems Biology Graphical Notation - Wikipedia

    en.wikipedia.org/wiki/Systems_Biology_Graphical...

    The Systems Biology Graphical Notation (SBGN) is a standard graphical representation intended to foster the efficient storage, exchange and reuse of information about signaling pathways, metabolic networks, and gene regulatory networks amongst communities of biochemists, biologists, and theoreticians.