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Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
FreeSurfer contains a set of programs with a common focus of analyzing magnetic resonance imaging (MRI) scans of brain tissue. It is an important tool in functional brain mapping and contains tools to conduct both volume based and surface based analysis. [ 4 ]
Structural MRI images Human Macroscopic MRI datasets Healthy and Alzheimer's disease: Yes [4] Big Brain 3D reconstruction of complete brain from cell-body stained histology sections at 20 micron isotropic resolution Human Microscopic Images Healthy No [5] BIRN fMRI and MRI data fMRI, MRI scans and atlases for human and mouse brains Mouse, Human
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
The result is an interactive 3D model of the brain tissue, and the largest dataset ever made at this resolution of a human brain structure. Google made it available online as “Neuroglancer ...
Medical image segmentation is made difficult by low contrast, noise, and other imaging ambiguities. Although there are many computer vision techniques for image segmentation, some have been adapted specifically for medical image computing. Below is a sampling of techniques within this field; the implementation relies on the expertise that ...
BrainMaps is an NIH-funded interactive zoomable high-resolution digital brain atlas and virtual microscope that is based on more than 140 million megapixels (140 terabytes) of scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain ...
Standard brain maps such as the Talairach-Tournoux or templates from the Montréal Neurological Institute (MNI) allow researchers from across the world to compare their results. Images can be smoothed to make the data less noisy (similar to the 'blur' effect used in some image-editing software) by which voxels are averaged with their neighbours ...