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The default behaviour of sorting without a data-sort-value or a sorting template is to use the whole text of the cell for sorting. This means that if before and after are not used and there is no text after the template then there is no reason to use the template.
sort samtools sort -o sorted_out unsorted_in.bam. Read the specified unsorted_in.bam as input, sort it by aligned read position, and write it out to sorted_out. Type of output can be either sam, bam, or cram, and will be determined automatically by sorted_out's file-extension. samtools sort -m 5000000 unsorted_in.bam sorted_out
The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools . [ 1 ]
Binary Alignment Map (BAM) is the comprehensive raw data of genome sequencing; [1] it consists of the lossless, compressed binary representation of the Sequence Alignment Map-files. [2] [3] BAM is the compressed binary representation of SAM (Sequence Alignment Map), a compact and index-able representation of nucleotide sequence alignments. [4]
See Template:Date table sorting for more info. In the tables below, all columns sort correctly. The wikitext for the first entry in each table in the first row is shown in the table header. Note: None of the table columns use the data-sort-type= modifier. Using data-sort-type= can sometimes break sorting when used with the template.
This template is for manually adjusting sorting order in sortable tables by specified sortkeys. Usage {{Sort | 1 = {{{sort value}}} | 2 = {{{displayed value}}} }} → {{{displayed value}}} The first parameter is the sortkey; the second parameter is the wikitext of what has to be displayed. By default, this is the sortkey with link brackets:
This category contains templates used in table rows of sortable tables, often to provide a hidden sort key (marked with the data-sort-value attribute), and/or to force a particular sort mode. The pages listed in this category are templates .
www.htslib.org /doc /samtools-mpileup.html Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment.