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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute
Therapeutic Targets Database Zhejiang University: drugs and targets SMILES InChI CAS PubChem "TTD". 37,316 T3DB Toxin and Toxin-Target Database Toxic Exposome Database. University of Alberta: toxins and toxin targets T3D "T3DB". 3,678 UniChem EMBL-EBI pointers to existing chemicals; indexes 41 databases [12] Structure; StdInChI; links to databases
Using the web-interface of the database, one can perform overrepresentation analysis, based on biochemical pathways or on neighbourhood-based entity sets (NESTs) that constitute sub-networks of the overall interaction network containing all physical entities around a central one within a "radius" (number of interactions from the center).
While at Los Alamos, he was one of the developers of the GenBank database of all publicly available nucleotide sequences and their protein translations. [4] [7] Kanehisa joined Kyoto University as an associate professor in 1985, becoming a professor in 1987. [6] In 1995, Kanehisa started the KEGG (Kyoto Encyclopedia of Genes and Genomes ...
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Among these are: The African Index Medicus – AIM (maintained by AFRO/WHO); the Scientific and Technical Literature of Latin America and the Caribbean – LILACS (maintained by AMRO-PAHO/WHO through its specialized center BIREME); Index Medicus for Eastern Mediterranean Region – IMEMR (EMRO/WHO); Index Medicus for South-East Asia Region ...
The database includes chemical data, clinical data and molecular/biochemistry data from literature and experiment. This database also references many other databases, such as KEGG , PubChem , MetaCyc , ChEBI , PDB , Swiss-Prot , GenBank , and Human Metabolome Database ( HMDB ).