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samtools sort -m 5000000 unsorted_in.bam sorted_out Read the specified unsorted_in.bam as input, sort it in blocks up to 5 million k (5 Gb) [ units verification needed ] and write output to a series of bam files named sorted_out.0000.bam , sorted_out.0001.bam , etc., where all bam 0 reads come before any bam 1 read, etc. [ verification needed ]
A range query is a common database operation that retrieves all records where some value is between an upper and lower boundary. [1] For example, list all employees with 3 to 5 years' experience. Range queries are unusual because it is not generally known in advance how many entries a range query will return, or if it will return any at all.
A database index is a data structure that improves the speed of data retrieval operations on a database table at the cost of additional writes and storage space to maintain the index data structure. Indexes are used to quickly locate data without having to search every row in a database table every time said table is accessed.
In SQL:1999 a recursive (CTE) query may appear anywhere a query is allowed. It's possible, for example, to name the result using CREATE [ RECURSIVE ] VIEW . [ 16 ] Using a CTE inside an INSERT INTO , one can populate a table with data generated from a recursive query; random data generation is possible using this technique without using any ...
www.htslib.org /doc /samtools-mpileup.html Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment.
The sort criteria can be expressions, including column names, user-defined functions, arithmetic operations, or CASE expressions. The expressions are evaluated and the results are used for the sorting, i.e., the values stored in the column or the results of the function call. ORDER BY is the only way to sort the
Given a function that accepts an array, a range query (,) on an array = [,..,] takes two indices and and returns the result of when applied to the subarray [, …,].For example, for a function that returns the sum of all values in an array, the range query (,) returns the sum of all values in the range [,].
A Block Range Index or BRIN is a database indexing technique. They are intended to improve performance with extremely large [ i ] tables. BRIN indexes provide similar benefits to horizontal partitioning or sharding but without needing to explicitly declare partitions.