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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
The third is necessary because algorithms for both multiple sequence alignment and structural alignment use heuristics which do not always perform perfectly. The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore ...
Figure Converters which convert matplotlib, [23] ggplot2, [24] and IGOR Pro [25] graphs into interactive, online graphs. A gallery of Plotly graphs Data visualization libraries
Compact Letter Display (CLD) is a statistical method to clarify the output of multiple hypothesis testing when using the ANOVA and Tukey's range tests. CLD can also be applied following the Duncan's new multiple range test (which is similar to Tukey's range test).
R: TraMineR [5] with its extension TraMineRextras [6] is probably the most comprehensive SA toolkit; ggseqplot, [154] provides ggplot versions of most TraMineR plots; seqhandbook [155] provides several specific tools such as heat maps of sequence data and the GIMSA method for measuring dissimilarities between multidomain sequences; seqimpute ...
Next to being useful for post-processing (see the next section), Inkscape is a point-and-click tool that can be used to create high-quality figures. It is a particularly easy tool for creating vector graphics , though GeoGebra and C.a.R. may be better suited for mathematical graphics.
The input could be one or more BAM files. HTML reports are generated as output. RSeQC [14] analyzes diverse aspects of RNA-Seq experiments: sequence quality, sequencing depth, strand specificity, GC bias, read distribution over the genome structure and coverage uniformity. The input can be SAM, BAM, FASTA, BED files or Chromosome size file (two ...
An estimator for the slope with approximately median rank, having the same breakdown point as the Theil–Sen estimator, may be maintained in the data stream model (in which the sample points are processed one by one by an algorithm that does not have enough persistent storage to represent the entire data set) using an algorithm based on ε-nets.