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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
plots and charts from data Plotly: GUI, command line Python: Commercial: No 2012: Any (web-based) plots and charts in browser, web-sharing and exporting, drag-and-drop data import, Python command line plotutils: command line, C/ C++: GPL: Yes 1989: September 27, 2009 / 2.6: Linux, Mac, Windows: Collection of command line programs, C/C++ API PLplot
A small multiple (sometimes called trellis chart, lattice chart, grid chart, or panel chart) is a series of similar graphs or charts using the same scale and axes, allowing them to be easily compared. It uses multiple views to show different partitions of a dataset. The term was popularized by Edward Tufte. According to Tufte,
Multiple plots are linked so identifying one point in one plot will identify the same point on all other graphs, and brushing a group of points in one plot will highlight the same points in other plots. The linking can be one-to-one, or according to the values of a categorical variable in the data set. Moving points
RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It is available in two formats: RStudio Desktop is a regular desktop application while RStudio Server runs on a remote server and allows accessing RStudio using a web browser.
A funnel plot is a scatterplot of treatment effect against a measure of study size. It is used primarily as a visual aid to detecting bias or systematic heterogeneity. Dot plot (statistics) : A dot chart or dot plot is a statistical chart consisting of group of data points plotted on a
R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.
Packages like ggplot2 in R and Matplotlib in Python are often used to create the visuals. The table can also be annotated using a reference annotation file, usually in GTF or GFF format to provide more context about the genes, such as the chromosome name, strand, and start and positions, and aid result interpretation.