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Similarly, the same sequences in the fugu genome have 68% identity to human UCEs, despite the human genome only reliably aligning to 1.8% of the fugu genome. [4] Despite often being noncoding DNA , [ 6 ] some ultraconserved elements have been found to be transcriptionally active, producing non-coding RNA molecules.
BioJava is an open-source software project dedicated to provide Java tools to process biological data. [1] [2] [3] BioJava is a set of library functions written in the programming language Java for manipulating sequences, protein structures, file parsers, Common Object Request Broker Architecture (CORBA) interoperability, Distributed Annotation System (DAS), access to AceDB, dynamic ...
A shortest common supersequence (SCS) is a common supersequence of minimal length. In the SCS problem, two sequences X and Y are given, and the task is to find a shortest possible common supersequence of these sequences. In general, an SCS is not unique. For two input sequences, an SCS can be formed from a longest common subsequence (LCS
The release on December 8, 1998 and subsequent releases through J2SE 5.0 were rebranded retrospectively Java 2 and the version name "J2SE" (Java 2 Platform, Standard Edition) replaced JDK to distinguish the base platform from J2EE (Java 2 Platform, Enterprise Edition) and J2ME (Java 2 Platform, Micro Edition). This was a very significant ...
A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring : unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences.
In mathematics and computer science, Recamán's sequence [1] [2] is a well known sequence defined by a recurrence relation. Because its elements are related to the previous elements in a straightforward way, they are often defined using recursion .
Residues that are conserved across all sequences are highlighted in grey. Below each site (i.e., position) of the protein sequence alignment is a key denoting conserved sites (*), sites with conservative replacements (:), sites with semi-conservative replacements (.), and sites with non-conservative replacements ( ).
The three leading Slepian sequences for T=1000 and 2WT=6. Note that each higher order sequence has an extra zero crossing. The spectral concentration problem in Fourier analysis refers to finding a time sequence of a given length whose discrete Fourier transform is maximally localized on a given frequency interval, as measured by the spectral concentration.