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  2. Python Package Index - Wikipedia

    en.wikipedia.org/wiki/Python_Package_Index

    The Python Package Index, abbreviated as PyPI (/ ˌ p aɪ p i ˈ aɪ /) and also known as the Cheese Shop (a reference to the Monty Python's Flying Circus sketch "Cheese Shop"), [2]: 8 [3]: 742 is the official third-party software repository for Python. [4] It is analogous to the CPAN repository for Perl [5]: 36 and to the CRAN repository for R.

  3. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.

  4. List of finite element software packages - Wikipedia

    en.wikipedia.org/wiki/List_of_finite_element...

    Yes, VTK-based GUI, Python visualizatuion library Buil-in simple plotting + External Built-in with optional Plotly and GMV export Output format: Text and unstructured VTK-file for data. BMP, PNG, GIF, TIFF, JPEG, glTF, Windows clipboard, Microsoft PowerPoint (for images). GIF, Flash, AVI, WebM (for animations). Touchstone data (for networks).

  5. Python (programming language) - Wikipedia

    en.wikipedia.org/wiki/Python_(programming_language)

    Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. [33] Python is dynamically type-checked and garbage-collected. It supports multiple programming paradigms, including structured (particularly procedural), object-oriented and functional ...

  6. LZ4 (compression algorithm) - Wikipedia

    en.wikipedia.org/wiki/LZ4_(compression_algorithm)

    This is followed by an offset that indicates how far back in the output buffer to begin copying. The extra bytes (if any) of the match-length come at the end of the sequence. [6] [7] Compression can be carried out in a stream or in blocks. Higher compression ratios can be achieved by investing more effort in finding the best matches.

  7. Approximate string matching - Wikipedia

    en.wikipedia.org/wiki/Approximate_string_matching

    With the availability of large amounts of DNA data, matching of nucleotide sequences has become an important application. [1] Approximate matching is also used in spam filtering. [5] Record linkage is a common application where records from two disparate databases are matched. String matching cannot be used for most binary data, such as images ...

  8. Sensitivity index - Wikipedia

    en.wikipedia.org/wiki/Sensitivity_index

    Simpson and Fitter [3] promoted ′ as the best index, particularly for two-interval tasks, but Das and Geisler [1] have shown that ′ is the optimal discriminability in all cases, and ′ is often a better closed-form approximation than ′, even for two-interval tasks.

  9. Block Range Index - Wikipedia

    en.wikipedia.org/wiki/Block_Range_Index

    A large database index would typically use B-tree algorithms. BRIN is not always a substitute for B-tree, it is an improvement on sequential scanning of an index, with particular (and potentially large) advantages when the index meets particular conditions for being ordered and for the search target to be a narrow set of these values.