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Oryza glaberrima (African rice) var CG14: Poaceae: West-African species of rice: 2010 [210] Oryza rufipogon (red rice) Poaceae: Ancestor to Oryza sativa: 406 Mb: 37,071: SIBS: 2012 [211] Illumina HiSeq2000 100x coverage Oryza sativa (long grain rice) ssp indica: Poaceae: Crop and model cereal: 430 Mb [212] International Rice Genome Sequencing ...
BASys (Bacterial Annotation System) is a tool for automated annotation of bacterial genomic (chromosomal and plasmid) sequences including gene/protein names, GO functions, COG functions, possible paralogues and orthologues, molecular weights, isoelectric points, operon structures, subcellular localization, signal peptides, transmembrane regions ...
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Karyotype visualisation in Ensembl Genomes. The key feature of Ensembl Genomes is its graphical interface, which allows users to scroll through a genome and observe the relative location of features such as conceptual annotation (e.g. genes, SNP loci), sequence patterns (e.g. repeats) and experimental data (e.g. sequences and external sequence features mapped onto the genome). [1]
RGD (Rat Genome Database): genomic and phenotype data for Rattus norvegicus; Saccharomyces Genome Database: [12] genome of the yeast model organism; SNPedia; SoyBase Database [13] (SoyBase): USDA soybean genetics and genomic database ; UCSC Malaria Genome Browser: genome of malaria causing species (Plasmodium falciparum and others)
Nutritious Rice for the World [2] is a World Community Grid research project in the field of agronomy led by the Samudrala Computational Biology Research Group [1] at the University of Washington. It was launched on May 12, 2008. [3] [4] The objective of this project is to predict the structure of proteins of major strains of rice.
Fast detection of coding regions in short genome sequences: Dragon Promoter Finder Program to recognize vertebrate RNA polymerase II promoters: Vertebrates [7] EasyGene: The gene finder is based on a hidden Markov model (HMM) that is automatically estimated for a new genome. Prokaryotes [8] [9] EuGene: Integrative gene finding: Prokaryotes ...
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC).