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database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials Protein model databases BioGRID: Samuel Lunenfeld Research Institute
The Database Issue of NAR is freely available, and categorizes many of the public biological databases. A companion database to the issue called the Online Molecular Biology Database Collection lists 1,380 online databases. [15] Other collections of databases exist such as MetaBase and the Bioinformatics Links Collection. [16] [17]
The database aims to make quantitative values more easily available, to aid fields such as systems biology. The BioNumbers project performs literature-based curation of various sources. [ 1 ] It is a regularly updated online resource that contains >13,000 entries from ~1,000 distinct references. [ 2 ]
Database link-out Baker's yeast Saccharomyces cerevisiae: Saccharomyces Genome Database: SGD [6] Fission yeast Schizosaccharomyces pombe: PomBase: PomBase [7] [8] [9] Clawed frog Xenopus: Xenbase: Xenbase [10] [11] Sea urchins, starfish, etc. Echinodermata: Echinobase: Echinobase [12] Fruitfly Drosophila melanogaster: FlyBase: FlyBase [13] Bees ...
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
SchizConnect is an open, public search-and-download virtual database for schizophrenia neuroimaging (MRI) images and related data. Human Macroscopic Structural, Diffusion and Functional MRI datasets, cognitive and clinical assessments Schizophrenia (+ siblings), Bipolar Disorder, Controls (+ siblings) Yes [43] Temple EEG Database
Biology: Open access preprint repository for the biological sciences >100,000 [9] 2013 Cold Spring Harbor Laboratory: BodoArXiv: Medieval Studies: Open Repository for Medieval Studies <100 2019 ScholarlyHub & Center for Open Science: Cell Sneak Peek: Biology: Manuscript under review in Cell Press journals >1,000 2018 Elsevier: ChemRxiv [10 ...
AceDB is a biological database for handling genomic data. It was developed by Richard M. Durbin and Jean Thierry-Mieg in 1989. [1] AceDB stands for a C. elegans database. Although AceDB was initially created as a database specifically for the nematode worm it has also come to mean the database software itself, which has been used to store ...