Search results
Results from the WOW.Com Content Network
Using a mutated pseudo-wild-type protein specifically mutated to prevent precipitation at high pH, the salt bridge’s contribution to the overall free energy of the folded protein state can be determined by performing a point-mutation, altering and, consequently, breaking the salt bridge. For example, a salt bridge was identified to exist in ...
In electrochemistry, a salt bridge or ion bridge is an essential laboratory device discovered over 100 years ago. [ 1 ] It contains an electrolyte solution, typically an inert solution, used to connect the oxidation and reduction half-cells of a galvanic cell (voltaic cell), a type of electrochemical cell .
Example salt bridge network in 2-deoxyribose-5-phosphate aldolase ( ). Interactions are shown as cyan dashed lines. Polar residues are colored green. Polar amino acids aspartate (D), glutamate (E), lysine (K), and arginine (R), are shown here. Salt bridges within TIM barrel pores are thought to contribute to the overall stability of the fold.
A chaotrope denatures biomolecules by disrupting the shell of hydration around them. This allows positively charged ions to form a salt bridge between the negatively charged silica and the negatively charged DNA backbone in high salt concentration. The DNA can then be washed with high salt and ethanol, and ultimately eluted with low salt.
Other mechanisms include minimization of solvent accessibility of acidic residues or binding of metal cofactors. In a specialized case of acid stability, the NAPase protein from Nocardiopsis alba was shown to have relocated acid-sensitive salt bridges away from regions that play an important role in the unfolding process. In this case of ...
Conserved residues in the linker between the two eIF4AIII domains form salt bridges or hydrogen bonds with specific residues in Magoh. [21] Other bonding occurs between the second loop of the Magoh β–sheet and the two eIF4AIII domains and their linker. [21] There is only a single partial bond formed between Y14 and eIF4AIII.
This interaction is an example of noncovalent bonding between a monopole (cation) and a quadrupole (π system). Bonding energies are significant, with solution-phase values falling within the same order of magnitude as hydrogen bonds and salt bridges.
In aqueous solutions of glycans, lyotropic ion-pairing effects often dominate molecular interactions by controlling salt-bridge binding. [11] Modern computational approaches in salt-bridge formation in proteins demonstrate mechanisms underlying the favorable arginine -arginine pairing that is due to reduction in electrostatic repulsion due to ...