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  2. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    Protein Data Bank: Protein DataBank in Europe (PDBe), [18] ProteinDatabank in Japan (PDBj), [19] Research Collaboratory for Structural Bioinformatics (RCSB) [20] (PDB) Protein structure databases Structural Classification of Proteins (SCOP) Protein structure databases CATH database: Protein structure databases ModBase: Sali Lab, UCSF

  3. Protein structure database - Wikipedia

    en.wikipedia.org/wiki/Protein_structure_database

    a protein databases that includes visuals of protein structure. Also, includes protein pathways and gene sequences including other tools. SCOP the Structural Classification of Proteins a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known. SWISS-MODEL Repository a ...

  4. Protein Data Bank - Wikipedia

    en.wikipedia.org/wiki/Protein_Data_Bank

    162,041 structures in the PDB have a structure factor file. 11,242 structures have an NMR restraint file. 5,774 structures in the PDB have a chemical shifts file. 13,388 structures in the PDB have a 3DEM map file deposited in EM Data Bank. Most structures are determined by X-ray diffraction, but about 7% of structures are determined by protein ...

  5. CATH database - Wikipedia

    en.wikipedia.org/wiki/CATH_database

    The CATH Protein Structure Classification database is a free, publicly available online resource that provides information on the evolutionary relationships of protein domains. It was created in the mid-1990s by Professor Christine Orengo and colleagues including Janet Thornton and David Jones , [ 2 ] and continues to be developed by the Orengo ...

  6. Structural Classification of Proteins database - Wikipedia

    en.wikipedia.org/wiki/Structural_Classification...

    The Structural Classification of Proteins (SCOP) database is a largely manual classification of protein structural domains based on similarities of their structures and amino acid sequences. A motivation for this classification is to determine the evolutionary relationship between proteins.

  7. Structural bioinformatics - Wikipedia

    en.wikipedia.org/wiki/Structural_bioinformatics

    The Protein Data Bank (PDB) is a database of 3D structure data for large biological molecules, such as proteins, DNA, and RNA. PDB is managed by an international organization called the Worldwide Protein Data Bank , which is composed of several local organizations, as. PDBe, PDBj, RCSB, and BMRB.

  8. Category:Protein structure databases - Wikipedia

    en.wikipedia.org/wiki/Category:Protein_structure...

    Download as PDF; Printable version; In other projects ... Protein structure database; S. Structural Classification of Proteins database; V. Volume Area Dihedral Angle ...

  9. Protein Data Bank (file format) - Wikipedia

    en.wikipedia.org/wiki/Protein_Data_Bank_(file...

    The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank, now succeeded by the mmCIF format. The PDB format accordingly provides for description and annotation of protein and nucleic acid structures including atomic coordinates, secondary structure ...