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  2. Amino acid - Wikipedia

    en.wikipedia.org/wiki/Amino_acid

    The 20 amino acids that are encoded directly by the codons of the universal genetic code are called standard or canonical amino acids. A modified form of methionine (N-formylmethionine) is often incorporated in place of methionine as the initial amino acid of proteins in bacteria, mitochondria and plastids (including chloroplasts).

  3. DNA and RNA codon tables - Wikipedia

    en.wikipedia.org/wiki/DNA_and_RNA_codon_tables

    The genetic code was once believed to be universal: [20] a codon would code for the same amino acid regardless of the organism or source. However, it is now agreed that the genetic code evolves, [21] resulting in discrepancies in how a codon is translated depending on the genetic source.

  4. Genetic code - Wikipedia

    en.wikipedia.org/wiki/Genetic_code

    If amino acids were randomly assigned to triplet codons, there would be 1.5 × 10 84 possible genetic codes. [81]: 163 This number is found by calculating the number of ways that 21 items (20 amino acids plus one stop) can be placed in 64 bins, wherein each item is used at least once. [82]

  5. Protein primary structure - Wikipedia

    en.wikipedia.org/wiki/Protein_primary_structure

    Protein primary structure is the linear sequence of amino acids in a peptide or protein. [1] By convention, the primary structure of a protein is reported starting from the amino-terminal (N) end to the carboxyl-terminal (C) end. Protein biosynthesis is most commonly performed by ribosomes in cells. Peptides can also be synthesized in the ...

  6. Proteinogenic amino acid - Wikipedia

    en.wikipedia.org/wiki/Proteinogenic_amino_acid

    In eukaryotes, there are only 21 proteinogenic amino acids, the 20 of the standard genetic code, plus selenocysteine. Humans can synthesize 12 of these from each other or from other molecules of intermediary metabolism. The other nine must be consumed (usually as their protein derivatives), and so they are called essential amino acids.

  7. FASTA format - Wikipedia

    en.wikipedia.org/wiki/FASTA_format

    In bioinformatics and biochemistry, the FASTA format is a text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented using single-letter codes. The format allows for sequence names and comments to precede the sequences.

  8. Gene nomenclature - Wikipedia

    en.wikipedia.org/wiki/Gene_nomenclature

    Amino acids: ala = alanine; arg = arginine; asn = asparagine; Some pathways produce metabolites that are precursors of more than one pathway. Hence, loss of one of these enzymes will lead to a requirement for more than one amino acid. For example: ilv: isoleucine and valine; Nucleotides: gua = guanine; pur = purines; pyr = pyrimidine; thy ...

  9. List of proteins - Wikipedia

    en.wikipedia.org/wiki/List_of_proteins

    They consist of a long polypeptide chain that usually adopts a single stable three-dimensional structure. They fulfill a wide variety of functions including providing structural stability to cells, catalyze chemical reactions that produce or store energy or synthesize other biomolecules including nucleic acids and proteins, transport essential ...