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In bioinformatics, the root mean square deviation of atomic positions is the measure of the average distance between the atoms of superimposed proteins. In structure based drug design, the RMSD is a measure of the difference between a crystal conformation of the ligand conformation and a docking prediction.
Ordinary least squares regression of Okun's law.Since the regression line does not miss any of the points by very much, the R 2 of the regression is relatively high.. In statistics, the coefficient of determination, denoted R 2 or r 2 and pronounced "R squared", is the proportion of the variation in the dependent variable that is predictable from the independent variable(s).
where δ i is the distance between atom i and either a reference structure or the mean position of the N equivalent atoms. This is often calculated for the backbone heavy atoms C, N, O, and C α or sometimes just the C α atoms. Normally a rigid superposition which minimizes the RMSD is performed, and this minimum is returned.
The RMS value of a set of values (or a continuous-time waveform) is the square root of the arithmetic mean of the squares of the values, or the square of the function that defines the continuous waveform.
The MSE either assesses the quality of a predictor (i.e., a function mapping arbitrary inputs to a sample of values of some random variable), or of an estimator (i.e., a mathematical function mapping a sample of data to an estimate of a parameter of the population from which the data is sampled).
The standard deviation of the observed field () is side a, the standard deviation of the test field () is side b, the centered RMS difference (centered RMS difference is the mean-removed RMS difference, and is equivalent to the standard deviation of the model errors [17]) between the two fields (E′) is side c, and the cosine of the angle ...
Jessica Capshaw and Camilla Luddington talk about their new podcast and reflect on their time on Grey's Anatomy. (Corbis via Getty Images) (Stephane Cardinale - Corbis via Getty Images)
The MAE is conceptually simpler and also easier to interpret than RMSE: it is simply the average absolute vertical or horizontal distance between each point in a scatter plot and the Y=X line. In other words, MAE is the average absolute difference between X and Y.