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DBSCAN* [6] [7] is a variation that treats border points as noise, and this way achieves a fully deterministic result as well as a more consistent statistical interpretation of density-connected components. The quality of DBSCAN depends on the distance measure used in the function regionQuery(P,ε).
kde2d.m A Matlab function for bivariate kernel density estimation. libagf A C++ library for multivariate, variable bandwidth kernel density estimation. akde.m A Matlab m-file for multivariate, variable bandwidth kernel density estimation. helit and pyqt_fit.kde Module in the PyQt-Fit package are Python libraries for multivariate kernel density ...
In Analytica release 4.4, the Smoothing option for PDF results uses KDE, and from expressions it is available via the built-in Pdf function. In C/C++, FIGTree is a library that can be used to compute kernel density estimates using normal kernels. MATLAB interface available. In C++, libagf is a library for variable kernel density estimation.
The density estimates are kernel density estimates using a Gaussian kernel. That is, a Gaussian density function is placed at each data point, and the sum of the density functions is computed over the range of the data. From the density of "glu" conditional on diabetes, we can obtain the probability of diabetes conditional on "glu" via Bayes ...
The R package "dbscan" includes a C++ implementation of OPTICS (with both traditional dbscan-like and ξ cluster extraction) using a k-d tree for index acceleration for Euclidean distance only. Python implementations of OPTICS are available in the PyClustering library and in scikit-learn. HDBSCAN* is available in the hdbscan library.
k-medoids (also: Partitioning Around Medoids, PAM) uses the medoid instead of the mean, and this way minimizes the sum of distances for arbitrary distance functions. Fuzzy C-Means Clustering is a soft version of k -means, where each data point has a fuzzy degree of belonging to each cluster.
MATLAB (an abbreviation of "MATrix LABoratory" [18]) is a proprietary multi-paradigm programming language and numeric computing environment developed by MathWorks.MATLAB allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages.
In data mining, k-means++ [1] [2] is an algorithm for choosing the initial values (or "seeds") for the k-means clustering algorithm. It was proposed in 2007 by David Arthur and Sergei Vassilvitskii, as an approximation algorithm for the NP-hard k-means problem—a way of avoiding the sometimes poor clusterings found by the standard k-means algorithm.