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Linux, macOS, Windows: GPL and LGPL: Free open source GNU GPLv2 or later EMBOSS: Suite of packages for sequencing, searching, etc. written in C: Linux, macOS, Unix, Windows [4] GPL and LGPL: Collaborative project Galaxy: Scientific workflow and data integration system Unix-like: Academic Free: Collaborative project GenePattern
Proprietary, free academic use, source code Beckman Institute: NWChem: No No Yes Yes No No Yes No No High-performance computational chemistry software, includes quantum mechanics, molecular dynamics and combined QM-MM methods Free open source, Educational Community License version 2.0 NWChem: Protein Local Optimization Program: No Yes Yes Yes ...
The Staden Package was developed by Rodger Staden's group at the Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, England, since 1977. [2] [3] [4] The package was available free to academic users, with 2,500 licenses issued in 2003 and an estimated 10,000 users, when funding for further development ended. [5]
DNA rearrangement causes one copy of each type of gene segment to go in any given lymphocyte, generating an enormous antibody repertoire; roughly 3×10 11 combinations are possible, although some are removed due to self reactivity. Most T cell receptors are composed of a variable alpha chain and a beta chain. The T cell receptor genes are ...
List of protein structure prediction software; List of sequence alignment software; List of gene prediction software; List of RNA structure prediction software; Comparison of software for molecular mechanics modeling; List of software for Monte Carlo molecular modeling; List of software for nanostructures modeling; Force field
Harvard researchers proved that it is possible to store information in bacteria after successfully archiving images and movies in the DNA of living E. coli cells. [9] In 2021, a team led by biophysicist Sangram Bagh realized a study with E. coli to solve 2 x 2 maze problems to probe the principle for distributed computing among cells. [10] [11]
A cross-platform modelling environment, which is aimed at organizing, editing, simulating, and analysing CellML files on Windows, Linux and macOS. multiplatform (C++/Python) GPLv3: Uses CellML: PhysiBoSS: A specialized form of the PhysiCell agent-based modeling platform that directly integrates Boolean signaling networks into cell Agents [19]
Agilent Technologies RFLP Decoder Software, Fish Species; Applied Biosystems GeneMapper; Joint BioEnergy Institute j5; CLC bio CLC DNA Workbench Software; CLC bio CLC Free Workbench Software; CLC bio CLC Sequence Viewer; CLC bio Protein Workbench Software; DNASTAR Lasergene; Geneious; LabVantage Solutions Inc. LabVantage Sapphire; LabVantage ...