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Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some specific sense defined by the analyst) to each other than to those in other groups (clusters).
At each step, the nearest two clusters, say and , are combined into a higher-level cluster . Then, its distance to another cluster k {\displaystyle k} is simply the arithmetic mean of the average distances between members of k {\displaystyle k} and i {\displaystyle i} and k {\displaystyle k} and j {\displaystyle j} :
Biclustering, block clustering, [1] [2] Co-clustering or two-mode clustering [3] [4] [5] is a data mining technique which allows simultaneous clustering of the rows and columns of a matrix. The term was first introduced by Boris Mirkin [ 6 ] to name a technique introduced many years earlier, [ 6 ] in 1972, by John A. Hartigan .
Much of the model-based clustering software is in the form of a publicly and freely available R package. Many of these are listed in the CRAN Task View on Cluster Analysis and Finite Mixture Models. [34] The most used such package is mclust, [35] [36] which is used to cluster continuous data and has been downloaded over 8 million times. [37]
The average silhouette of the data is another useful criterion for assessing the natural number of clusters. The silhouette of a data instance is a measure of how closely it is matched to data within its cluster and how loosely it is matched to data of the neighboring cluster, i.e., the cluster whose average distance from the datum is lowest. [8]
In the theory of cluster analysis, the nearest-neighbor chain algorithm is an algorithm that can speed up several methods for agglomerative hierarchical clustering.These are methods that take a collection of points as input, and create a hierarchy of clusters of points by repeatedly merging pairs of smaller clusters to form larger clusters.
Complete-linkage clustering is one of several methods of agglomerative hierarchical clustering. At the beginning of the process, each element is in a cluster of its own. The clusters are then sequentially combined into larger clusters until all elements end up being in the same cluster. The method is also known as farthest neighbour clustering.
UPGMA (unweighted pair group method with arithmetic mean) is a simple agglomerative (bottom-up) hierarchical clustering method. It also has a weighted variant, WPGMA, and they are generally attributed to Sokal and Michener.