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  2. List of molecular graphics systems - Wikipedia

    en.wikipedia.org/wiki/List_of_molecular_graphics...

    Graphics, model building, molecular mechanics, quantum chemistry. Avizo: EM MM MRI Optical SMI XRD: Proprietary [5] Windows, Linux, Mac [6] [self-published source?] Avizo is derived from Amira and focusing on materials science. Avogadro: MM XRD MD: Free open-source, GPL C++, Qt, extensible via Python modules BALL: Molecular dynamics MM NMR ...

  3. List of chemical process simulators - Wikipedia

    en.wikipedia.org/wiki/List_of_chemical_process...

    This is a list of software used to simulate the material and energy balances of chemical process plants. Applications for this include design studies, engineering studies, design audits, debottlenecking studies, control system check-out, process simulation, dynamic simulation, operator training simulators, pipeline management systems, production management systems, digital twins.

  4. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...

  5. List of computer simulation software - Wikipedia

    en.wikipedia.org/wiki/List_of_computer...

    Scilab - free open-source software for numerical computation and simulation similar to MATLAB/Simulink. SDC Verifier - structural design and finite element analysis software with a calculation core for checking structures according to different standards, either predefined or self programmed, and final report generation with all checks.

  6. UCSF Chimera - Wikipedia

    en.wikipedia.org/wiki/UCSF_Chimera

    UCSF Chimera (or simply Chimera) is an extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. [1]

  7. CP2K - Wikipedia

    en.wikipedia.org/wiki/CP2K

    CP2K is a freely available quantum chemistry and solid state physics program package, written in Fortran 2008, to perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.

  8. Avogadro (software) - Wikipedia

    en.wikipedia.org/wiki/Avogadro_(software)

    Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, ... List of quantum chemistry and solid state physics software;

  9. Tinker (software) - Wikipedia

    en.wikipedia.org/wiki/Tinker_(software)

    Tinker, previously stylized as TINKER, is a suite of computer software applications for molecular dynamics simulation. The codes provide a complete and general set of tools for molecular mechanics and molecular dynamics, with some special features for biomolecules.