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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
In the Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in Perl) which creates a set of predicted gene locations and saves them in a MySQL database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community.
[1] [5] [6] The GeneCards database provides access to free Web resources about more than 350,000 known and predicted human genes, integrated from >150 data resources, such as HGNC, Ensembl, and NCBI. The core gene list is based on NCBI, Ensembl and approved gene symbols published by the HUGO Gene Nomenclature Committee (HGNC).
12836 Ensembl ENSG00000114270 ENSMUSG00000025650 UniProt Q02388 Q63870 RefSeq (mRNA) NM_000094 NM_007738 RefSeq (protein) NP_000085 NP_031764 Location (UCSC) Chr 3: 48.56 – 48.6 Mb Chr 9: 108.78 – 108.81 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse Domains and subdomains of Collagen VII, including the position of the exons (EX) encoding each domain. Collagen alpha-1(VII) chain ...
EZH2, as a part of PRC2, catalyzes trimethylation of H3K27 (), which is a histone modification that has been characterized as part of the histone code.[16] [20] [21] [22] The histone code is the theory that chemical modifications, such as methylation, acetylation, and ubiquitination, of histone proteins play distinctive roles in epigenetic regulation of gene transcription.
12370 Ensembl ENSG00000064012 ENSMUSG00000026029 UniProt Q14790 O89110 RefSeq (mRNA) NM_001080124 NM_001080125 NM_001228 NM_033355 NM_033356 NM_033357 NM_033358 NM_001372051 NM_001080126 NM_001277926 NM_009812 RefSeq (protein) NP_001073593 NP_001073594 NP_001219 NP_203519 NP_203520 NP_203522 NP_001358980 NP_001073595 NP_001264855 NP_033942 Location (UCSC) Chr 2: 201.23 – 201.29 Mb Chr 1: 58 ...
Studies show that keeping your head at the appropriate height—about 2 inches (or 5 centimeters) off the bed—helps air flow into the lungs and stabilizes your respiratory function. However ...
411 11881 Ensembl ENSG00000113273 ENSMUSG00000042082 UniProt P15848 P50429 RefSeq (mRNA) NM_000046 NM_198709 NM_009712 RefSeq (protein) NP_000037 NP_942002 NP_033842 Location (UCSC) Chr 5: 78.78 – 78.99 Mb Chr 13: 93.91 – 94.08 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse arylsulfatase B Crystallographic structure of putative tetrameric arylsulfatase from Escherichia coli ...