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The Database of Interacting Proteins (DIP) is a biological database which catalogs experimentally determined interactions between proteins. [ 2 ] [ 3 ] It combines information from a variety of sources to create a single, consistent set of protein–protein interactions.
The ConsensusPathDB is a molecular functional interaction database, integrating information on protein interactions, genetic interactions signaling, metabolism, gene regulation, and drug-target interactions in humans. ConsensusPathDB currently (release 30) includes such interactions from 32 databases. [1]
RNA-binding protein database: Protein-protein and other molecular interactions Database of Interacting Proteins: Univ. of California: Protein-protein and other molecular interactions IntAct [21] EMBL-EBI: open-source database for molecular interactions Protein-protein and other molecular interactions String: an open source molecular interaction ...
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The RasMol and Jmol molecular graphics software are used to provide a 3D view of molecules and their interactions within PDBsum. [ 5 ] Since the release of the 1000 Genomes Project in October 2012, all single amino acid variants identified by the project have been mapped to the corresponding protein sequences in the Protein Data Bank.
For example, the primary database IntAct has 572,063 interactions, [64] the meta-database APID has 678,000 interactions, [65] and the predictive database STRING has 25,914,693 interactions. [66] However, it is important to note that some of the interactions in the STRING database are only predicted by computational methods such as Genomic ...
iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, InnateDB, IntAct, MatrixDB, MINT, MPact, MPIDB, MPPI and OPHID. [1]
As of 2008, only about <0.3% of all estimated interactions among human proteins has been identified, [9] although in recent years there has been exponential growth in discovery – as of 2015, [10] over 210 000 unique human positive protein–protein interactions are currently catalogued, and bioGRID database contains almost 750 000 literature ...