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In chemistry, a nucleophile is a chemical species that forms bonds by donating an electron pair. All molecules and ions with a free pair of electrons or at least one pi bond can act as nucleophiles. Because nucleophiles donate electrons, they are Lewis bases. Nucleophilic describes the affinity of a nucleophile to bond with positively charged ...
The RNA chain is synthesized from the 5' end to the 3' end as the 3'-hydroxyl group of the last ribonucleotide in the chain acts as a nucleophile and launches a hydrophilic attack on the 5'-triphosphate of the incoming ribonucleotide, releasing pyrophosphate as a by-[6] product. Due to the physical properties of the nucleotides, the backbone of ...
The nucleophile may be electrically neutral or negatively charged, whereas the substrate is typically neutral or positively charged. An example of nucleophilic substitution is the hydrolysis of an alkyl bromide, R-Br under basic conditions, where the attacking nucleophile is hydroxyl (OH −) and the leaving group is bromide (Br −).
An example of RNA secondary structure. This image includes several structural elements, including; single-stranded and double-stranded areas, bulges, internal loops and hairpin loops. Double-stranded RNA forms an A-type helical structure, unlike the common B-type conformation taken by double-stranded DNA molecules.
These elements are all in the 16th periodic table column , so have similar properties. [53] [54] In each case, changing the nucleophile lowered the enzyme's protease activity, but increased a new activity. A sulfur nucleophile improved the enzymes transferase activity (sometimes called subtiligase).
Modern biology and biochemistry make intensive use of these techniques in recombinant DNA technology. Recombinant DNA is a man-made DNA sequence that has been assembled from other DNA sequences. They can be transformed into organisms in the form of plasmids or in the appropriate format, by using a viral vector . [ 159 ]
Cysteine (symbol Cys or C; [5] / ˈ s ɪ s t ɪ iː n /) [6] is a semiessential [7] proteinogenic amino acid with the formula HOOC−CH(−NH 2)−CH 2 −SH.The thiol side chain in cysteine enables the formation of disulfide bonds, and often participates in enzymatic reactions as a nucleophile.
Selenium, which is an essential element for animals and prokaryotes and is a beneficial element for many plants, is the least-common of all the elements essential to life. [ 3 ] [ 63 ] Selenium acts as the catalytic center of several antioxidant enzymes, such as glutathione peroxidase , [ 11 ] and plays a wide variety of other biological roles .