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The GTDB taxonomy is based on genome trees inferred with FastTree from an aligned concatenated set of 120 single copy marker proteins for Bacteria, and with IQ-TREE from a concatenated set of 53 (since RS207; 122 before) marker proteins for Archaea.
Bacterial taxonomy is the classification of strains within the domain Bacteria into hierarchies of similarity. This classification is similar to that of plants , mammals , and other taxonomies. However, biologists specializing in different areas have developed differing taxonomic conventions over time.
This article lists the orders of the Bacteria.The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases ...
NCBI Taxonomy: a taxonomic database operated by NCBI and ... database of DNA barcodes; Bacterial ... Bovine Metabolome Database is a free web database that ...
Bergey's Manual Trust was established in 1936 to sustain the publication of Bergey's Manual of Determinative Bacteriology and supplementary reference works. The Trust also recognizes individuals who have made outstanding contributions to bacterial taxonomy by presentation of the Bergey Award and Bergey Medal, jointly supported by funds from the Trust and from Springer, the publishers of the ...
BacDive (The Bacterial Diversity Database) is the worldwide largest database for standardized bacterial and archaeal strain-level information. Bac Dive is a comprehensive resource containing diverse data on bacterial and archaeal strains, including taxonomy, morphology, physiology, sampling and environmental data and sequence information.
'The All-Species Living Tree' Project logo ' The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of Bacteria and Archaea. [1]