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'The All-Species Living Tree' Project logo ' The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of Bacteria and Archaea. [1]
'The All-Species Living Tree' Project (SILVA LTP) provides a database of 16S rRNA sequences annotated with its own type of taxonomy. Ribosomal database project (RDP) is a similar project. [81] Greengenes is a system that combines the Web of Life phylogeny with 16S data and names from GTDB and LTP, as of version 2. It offers the 16S V4 region ...
There are several models of the branching order of bacterial phyla, one of these is the Genome Taxonomy Database (GTDB). The GTDB is an initiative to establish a standardised microbial taxonomy based on genome phylogeny, primarily funded by an Australian Research Council Laureate Fellowship.
This article lists the orders of the Bacteria.The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.
BacDive: bacterial metadatabase that provides strain-linked information about bacterial and archaeal biodiversity, including taxonomy information; Catalogue of Life: a meta-database of all species on earth; EzTaxon-e: database for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
BacDive (The Bacterial Diversity Database) is the worldwide largest database for standardized bacterial and archaeal strain-level information. Bac Dive is a comprehensive resource containing diverse data on bacterial and archaeal strains, including taxonomy, morphology, physiology, sampling and environmental data and sequence information.
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases ...
Bergey's Manual Trust was established in 1936 to sustain the publication of Bergey's Manual of Determinative Bacteriology and supplementary reference works. The Trust also recognizes individuals who have made outstanding contributions to bacterial taxonomy by presentation of the Bergey Award and Bergey Medal, jointly supported by funds from the Trust and from Springer, the publishers of the ...