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Allele frequency. Allele frequency, or gene frequency, is the relative frequency of an allele (variant of a gene) at a particular locus in a population, expressed as a fraction or percentage. [1] Specifically, it is the fraction of all chromosomes in the population that carry that allele over the total population or sample size.
The word "allele" is a short form of "allelomorph" ("other form", a word coined by British geneticists William Bateson and Edith Rebecca Saunders) in the 1900s, [7][8] which was used in the early days of genetics to describe variant forms of a gene detected as different phenotypes. It derives from the Greek prefix ἀλληλο-, allelo ...
Microevolution is the change in allele frequencies that occurs over time within a population. [1] This change is due to four different processes: mutation, selection (natural and artificial), gene flow and genetic drift. This change happens over a relatively short (in evolutionary terms) amount of time compared to the changes termed macroevolution.
Minor allele frequency. Minor allele frequency (MAF) is the frequency at which the second most common allele occurs in a given population. They play a surprising role in heritability since MAF variants which occur only once, known as "singletons", drive an enormous amount of selection. [1]
Genotype frequency in a population is the number of individuals with a given genotype divided by the total number of individuals in the population. [2] In population genetics, the genotype frequency is the frequency or proportion (i.e., 0 < f < 1) of genotypes in a population. Although allele and genotype frequencies are related, it is ...
Fixation index. The fixation index (FST) is a measure of population differentiation due to genetic structure. It is frequently estimated from genetic polymorphism data, such as single-nucleotide polymorphisms (SNP) or microsatellites. Developed as a special case of Wright's F-statistics, it is one of the most commonly used statistics in ...
The "base" allele frequencies of the example are those of the potential gamodeme: the frequency of A is p g = 0.75, while the frequency of a is q g = 0.25. [ White label " 1 " in the diagram.] Five example actual gamodemes are binomially sampled out of this base ( s = the number of samples = 5), and each sample is designated with an "index" k ...
Allele frequency in samples taken at different times Allozymes, Microsatellites Demographic history: Medium to high Allele frequency + evolutionary relationships Mt-DNA sequences Inter-population: Phylogeography, definition of evolutionary significant units (population structure) Medium to high Allele frequency in each population