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gnuplot is a command-line and GUI program that can generate two- and three-dimensional plots of functions, data, and data fits.The program runs on all major computers and operating systems (Linux, Unix, Microsoft Windows, macOS, FreeDOS, and many others). [3]
Coot Ramachandran plot validation tool Coot density fit validation tool. In macromolecular crystallography, the observed data is often weak and the observation-to-parameter ratio near 1. As a result, it is possible to build an incorrect atomic model into the electron density in some cases. To avoid this, careful validation is required.
A sina plot is a type of diagram in which numerical data are depicted by points distributed in such a way that the width of the point distribution is proportional to the kernel density. [1] [2] Sina plots are similar to violin plots, but while violin plots depict kernel density, sina plots depict the points themselves. In some situations, sina ...
LabPlot is a free and open-source, cross-platform computer program for interactive scientific plotting, curve fitting, nonlinear regression, data processing and data analysis. LabPlot is available, under the GPL-2.0-or-later license, for Windows, macOS, Linux, FreeBSD and Haiku operating systems.
Plotting of 3D data can be rendered using OpenGL using the Qwt3D libraries. The program is also extensible to a considerable degree via muParser and Python scripting language, which allows adding the arbitrary user-defined functions with access to graphs, matrices and data tables.
Exabyte.io [7] - a cloud-native integrated platform for nanoscale modeling, supporting simulations at multiple scales, including Density Functional Theory and Molecular Dynamics; JCMsuite – a finite element analysis software for simulating optical properties of nanostructures; LAMMPS – Open source molecular dynamics code
In Octave, kernel density estimation is implemented by the kernel_density option (econometrics package). In Origin, 2D kernel density plot can be made from its user interface, and two functions, Ksdensity for 1D and Ks2density for 2D can be used from its LabTalk, Python, or C code.
Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.