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In probability theory and computer science, a log probability is simply a logarithm of a probability. [1] The use of log probabilities means representing probabilities on a logarithmic scale ( − ∞ , 0 ] {\displaystyle (-\infty ,0]} , instead of the standard [ 0 , 1 ] {\displaystyle [0,1]} unit interval .
The log odds ratio shown here is based on the odds for the event occurring in group B relative to the odds for the event occurring in group A. Thus, when the probability of X occurring in group B is greater than the probability of X occurring in group A, the odds ratio is greater than 1, and the log odds ratio is greater than 0.
If p is a probability, then p/(1 − p) is the corresponding odds; the logit of the probability is the logarithm of the odds, i.e.: = = = = (). The base of the logarithm function used is of little importance in the present article, as long as it is greater than 1, but the natural logarithm with base e is the one most often used.
The corresponding probability of the value labeled "1" can vary between 0 (certainly the value "0") and 1 (certainly the value "1"), hence the labeling; [2] the function that converts log-odds to probability is the logistic function, hence the name.
The "68–95–99.7 rule" is often used to quickly get a rough probability estimate of something, given its standard deviation, if the population is assumed to be normal. It is also used as a simple test for outliers if the population is assumed normal, and as a normality test if the population is potentially not normal.
In probability theory and statistics, odds and similar ratios may be more natural or more convenient than probabilities. In some cases the log-odds are used, which is the logit of the probability. Most simply, odds are frequently multiplied or divided, and log converts multiplication to addition and division to subtractions.
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where , is the probability that amino acid transforms into amino acid , and , are the frequencies of amino acids i and j. The base of the logarithm is not important, and the same substitution matrix is often expressed in different bases.