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  2. FASTA format - Wikipedia

    en.wikipedia.org/wiki/FASTA_format

    Additionally, the Bioconductor Biostrings package can be used to read and manipulate FASTA files in R. [25] Several online format converters exist to rapidly reformat multi-FASTA files to different formats (e.g. NEXUS, PHYLIP) for use with different phylogenetic programs, such as the converter available on phylogeny.fr. [26]

  3. Nexus file - Wikipedia

    en.wikipedia.org/wiki/Nexus_file

    The extensible NEXUS file format is widely used in bioinformatics.It stores information about taxa, morphological and molecular characters, distances, genetic codes, assumptions, sets, trees, etc. [1] Several popular phylogenetic programs such as PAUP*, [2] MrBayes, [3] Mesquite, [4] MacClade [5] and SplitsTree [6] use this format.

  4. FASTA - Wikipedia

    en.wikipedia.org/wiki/FASTA

    FASTA is a DNA and protein sequence alignment software package first described by David J. Lipman and William R. Pearson in 1985. [1] Its legacy is the FASTA format which is now ubiquitous in bioinformatics .

  5. List of sequence alignment software - Wikipedia

    en.wikipedia.org/wiki/List_of_sequence_alignment...

    Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). DNA: Local, SemiGlobal, Global: Hepperle D (www.sequentix.de) 2020 GGSEARCH, GLSEARCH Global:Global (GG), Global:Local (GL) alignment with statistics: Protein: Global in query: W. Pearson: 2007 JAligner: Java open-source implementation of ...

  6. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    The input can be SAM, BAM, FASTA, BED files or Chromosome size file (two-column, plain text file). Visualization can be performed by genome browsers like UCSC, IGB and IGV. However, R scripts can also be used for visualization. SAMStat [15] identifies problems and reports several statistics at different phases of the process. This tool ...

  7. The Most Incompatible Zodiac Signs That Should Never, Ever ...

    www.aol.com/most-incompatible-zodiac-signs-never...

    Olena Ruban/Getty Images. 4. Incompatible: Taurus and Aquarius. The zodiac’s bull is stable and predictable, especially in matters of the heart.That can spell romance and reliability for some ...

  8. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    Proteome Analyst is a high-throughput tool for predicting properties for each protein in a proteome. The user provides a proteome in fasta format, and the system employs Psi-blast, Psipred and Modeller to predict protein function and subcellular localization.

  9. T-REX (web server) - Wikipedia

    en.wikipedia.org/wiki/T-REX_(web_server)

    T-REX (Tree and Reticulogram Reconstruction) [1] [2] is a freely available web server, developed at the department of Computer Science of the Université du Québec à Montréal, dedicated to the inference, validation and visualization of phylogenetic trees and phylogenetic networks.

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