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Software Description Platform License Developer .NET Bio Language-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists .NET Framework: Apache: Collaborative project AMPHORA: Metagenomics analysis software Linux: GPL: Jonathan Eisen: Anduril: Component-based workflow framework for data analysis
globalSeq [63] Global test for counts: testing for association between RNA-Seq and high-dimensional data. GPSeq This is a software tool to analyze RNA-seq data to estimate gene and exon expression, identify differentially expressed genes, and differentially spliced exons. IsoDOT – Differential RNA-isoform Expression.
Total DNA and/or RNA are extracted from the samples and are prepared on a DNA or RNA library for sequencing. [9] These methods have been used to sequence the whole genome of Epstein–Barr virus (EBV) and HCV , however, contaminating host nucleic acids can affect the sensitivity to the target viral genome with the proportion of reads related to ...
Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
Note:If MAST is combining reverse complement DNA strands, the position p-value is not corrected for multiple tests. Sequence p-value: The p-value of a match of a sequence to a motif is defined as the probability of a randomly generated sequence of the same length having a match score at least as large as the largest match score of any position ...
It is the first step of viral replication. Some viruses attach to the cell membrane of the host cell and inject its DNA or RNA into the host to initiate infection. Attachment to a host cell is often achieved by a virus attachment protein that extends from the protein shell (), of a virus.
Testing DNA is a technique which can detect specific genomes in a DNA strand to produce a unique and individualized pattern. DNA sequencing may be used along with DNA profiling methods for forensic identification and paternity testing , as it has evolved significantly over the past few decades to ultimately link a DNA print to what is under ...
RNA-Seq (named as an abbreviation of RNA sequencing) is a technique that uses next-generation sequencing to reveal the presence and quantity of RNA molecules in a biological sample, providing a snapshot of gene expression in the sample, also known as transcriptome.