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miRNA biogenesis in plants differs from animal biogenesis mainly in the steps of nuclear processing and export. Instead of being cleaved by two different enzymes, once inside and once outside the nucleus, both cleavages of the plant miRNA are performed by a Dicer homolog, called Dicer-like1 (DL1). DL1 is expressed only in the nucleus of plant ...
These two proteins homeostatically control miRNA biogenesis by an auto-feedback loop. [16] A 2nt 3' overhang is generated by Drosha in the nucleus recognized by Dicer in the cytoplasm, which couples the upstream and downstream processing events. Pre-miRNA is then further processed by the RNase Dicer into mature miRNAs in the cell cytoplasm.
The RNA-induced silencing complex, or RISC, is a multiprotein complex, specifically a ribonucleoprotein, which functions in gene silencing via a variety of pathways at the transcriptional and translational levels. [1]
In cellular biology, P-bodies, or processing bodies, are distinct foci formed by phase separation within the cytoplasm of a eukaryotic cell consisting of many enzymes involved in mRNA turnover. [1] P-bodies are highly conserved structures and have been observed in somatic cells originating from vertebrates and invertebrates , plants and yeast .
The genomic regions producing miRNA can be independent RNA-genes often being anti-sense to neighboring protein-coding genes, or can be found within the introns of protein-coding genes. [35] The co-localization of microRNA and protein-coding genes provides a mechanistic foundation by which microRNA regulates gene-expression.
AGO2 (grey) in complex with a microRNA (light blue) and its target mRNA (dark blue) In humans, there are eight AGO family members, some of which are investigated intensively. However, even though AGO1–4 are capable of loading miRNA, endonuclease activity and thus RNAi-dependent gene silencing exclusively belongs to AGO2.
[1] [2] These short hairpin introns formed via atypical miRNA biogenesis pathways. [ 3 ] [ 4 ] Mirtrons arise from the spliced-out introns and are known to function in gene expression. Mirtrons were first identified in Drosophila melanogaster and Caenorhabditis elegans .
Exportin-5 (XPO5) is a protein that, in humans, is encoded by the XPO5 gene. [5] [6] [7] In eukaryotic cells, the primary purpose of XPO5 is to export pre-microRNA (also known as pre-miRNA) out of the nucleus and into the cytoplasm, for further processing by the Dicer enzyme.