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Nile red (also known as Nile blue oxazone) is a lipophilic stain. Nile red stains intracellular lipid droplets yellow. In most polar solvents, Nile red will not fluoresce; however, when in a lipid-rich environment, it can be intensely fluorescent, with varying colors from deep red (for polar membrane lipid) to strong yellow-gold emission (for neutral lipid in intracellular storages).
Nile red (also known as Nile blue oxazone) is formed by boiling Nile blue with sulfuric acid. This produces a mix of Nile red and Nile blue. Nile red is a lipophilic stain; it will accumulate in lipid globules inside cells, staining them red. Nile red can be used with living cells.
They settled on nile red, a compound for dyeing used in biochemistry, as it sounded good and did not sound much like a chemical. A second channel, NileBlue, was created in 2016 to showcase more casual projects than the main channel, and a shorts channel, NileRed 2 (formerly NileRed Shorts), was created in 2021.
Fluorescent dyes such as Nile red and Nile blue are based on the aromatic compound benzophenoxazine. Cinnabarine and cinnabaric acid are two naturally occurring dioxazines, being derived from biodegradation of tryptophan. [2]
A simplified Jablonski diagram illustrating the change of energy levels.. The principle behind fluorescence is that the fluorescent moiety contains electrons which can absorb a photon and briefly enter an excited state before either dispersing the energy non-radiatively or emitting it as a photon, but with a lower energy, i.e., at a longer wavelength (wavelength and energy are inversely ...
The most versatile fluorimeters with dual monochromators and a continuous excitation light source can record both an excitation spectrum and a fluorescence spectrum. When measuring fluorescence spectra, the wavelength of the excitation light is kept constant, preferably at a wavelength of high absorption, and the emission monochromator scans ...
Positive solvatochromism corresponds to a bathochromic shift (or red shift) with increasing solvent polarity. An example of positive solvatochromism is provided by 4,4'-bis(dimethylamino)fuchsone, which is orange in toluene, red in acetone. The main value of the concept of solvatochromism is the context it provides to predict colors of solutions.
However, there is a limited amount of commercially available fluorescent dyes, and a limited amount of environmentally sensitive dyes, such as cyanine cy7. As a consequence, Pitner made a reactive Nile red dye, [70] [71] but to date no study with a Nile red-Ggbp sensor has been conducted. Nevertheless, several studies with NIR dyes have been done.